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Mutant Information

Mutant Name	FN2448 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2448 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20630956 A-T Hetero INTERGENIC
SBS Chr1 24619659 T-A Hetero UTR_3_PRIME
SBS Chr1 31547352 C-T Hetero INTERGENIC
SBS Chr2 14412721 A-C Hetero INTERGENIC
SBS Chr2 20557173 A-G Hetero INTERGENIC
SBS Chr2 31264076 C-T Homo INTERGENIC
SBS Chr2 33367110 G-A Hetero INTERGENIC
SBS Chr3 377093 A-G Hetero INTERGENIC
SBS Chr3 5446985 T-C Hetero INTERGENIC
SBS Chr3 16918990 C-A Hetero INTRON
SBS Chr4 33289 G-A Homo INTERGENIC
SBS Chr4 8842700 G-A Hetero INTRON
SBS Chr4 13499617 C-T Hetero INTERGENIC
SBS Chr4 21407513 T-C Hetero INTERGENIC
SBS Chr4 22812924 C-T Hetero INTERGENIC
SBS Chr5 17913904 G-C Homo INTERGENIC
SBS Chr6 7181118 G-A Homo INTERGENIC
SBS Chr6 13217040 G-A Homo INTRON
SBS Chr6 21245605 C-A Hetero INTERGENIC
SBS Chr7 6393559 A-G Hetero INTRON
SBS Chr7 10231111 T-C Hetero INTERGENIC
SBS Chr7 13388537 A-T Hetero INTERGENIC
SBS Chr8 10017526 G-A Hetero INTERGENIC
SBS Chr8 20792172 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g155300
SBS Chr9 2826051 C-T Homo INTERGENIC
SBS Chr10 5124399 T-A Hetero INTERGENIC
SBS Chr11 12585632 C-T Hetero INTERGENIC
SBS Chr11 14839013 T-G Hetero INTERGENIC
SBS Chr11 14983906 T-A Hetero INTERGENIC
SBS Chr11 20609142 T-G Homo INTERGENIC
SBS Chr11 27927921 T-G Hetero INTRON
SBS Chr12 8300252 G-A Homo INTERGENIC
SBS Chr12 21116817 G-A Hetero INTERGENIC
SBS Chr12 24040049 A-G Hetero UTR_3_PRIME

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 7762001 7786000 23999 2
Deletion Chr9 20409479 20409481 2
Deletion Chr5 25212110 25212111 1
Deletion Chr6 30608001 30630000 21999 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3903823 3903826 2
Insertion Chr4 1657635 1657638 2
Insertion Chr6 19135584 19135592 7
Insertion Chr8 24336220 24336223 2
Insertion Chr3 19362193 19362195 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20630956	A-T	Hetero	INTERGENIC
SBS	Chr1	24619659	T-A	Hetero	UTR_3_PRIME
SBS	Chr1	31547352	C-T	Hetero	INTERGENIC
SBS	Chr2	14412721	A-C	Hetero	INTERGENIC
SBS	Chr2	20557173	A-G	Hetero	INTERGENIC
SBS	Chr2	31264076	C-T	Homo	INTERGENIC
SBS	Chr2	33367110	G-A	Hetero	INTERGENIC
SBS	Chr3	377093	A-G	Hetero	INTERGENIC
SBS	Chr3	5446985	T-C	Hetero	INTERGENIC
SBS	Chr3	16918990	C-A	Hetero	INTRON
SBS	Chr4	33289	G-A	Homo	INTERGENIC
SBS	Chr4	8842700	G-A	Hetero	INTRON
SBS	Chr4	13499617	C-T	Hetero	INTERGENIC
SBS	Chr4	21407513	T-C	Hetero	INTERGENIC
SBS	Chr4	22812924	C-T	Hetero	INTERGENIC
SBS	Chr5	17913904	G-C	Homo	INTERGENIC
SBS	Chr6	7181118	G-A	Homo	INTERGENIC
SBS	Chr6	13217040	G-A	Homo	INTRON
SBS	Chr6	21245605	C-A	Hetero	INTERGENIC
SBS	Chr7	6393559	A-G	Hetero	INTRON
SBS	Chr7	10231111	T-C	Hetero	INTERGENIC
SBS	Chr7	13388537	A-T	Hetero	INTERGENIC
SBS	Chr8	10017526	G-A	Hetero	INTERGENIC
SBS	Chr8	20792172	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g155300
SBS	Chr9	2826051	C-T	Homo	INTERGENIC
SBS	Chr10	5124399	T-A	Hetero	INTERGENIC
SBS	Chr11	12585632	C-T	Hetero	INTERGENIC
SBS	Chr11	14839013	T-G	Hetero	INTERGENIC
SBS	Chr11	14983906	T-A	Hetero	INTERGENIC
SBS	Chr11	20609142	T-G	Homo	INTERGENIC
SBS	Chr11	27927921	T-G	Hetero	INTRON
SBS	Chr12	8300252	G-A	Homo	INTERGENIC
SBS	Chr12	21116817	G-A	Hetero	INTERGENIC
SBS	Chr12	24040049	A-G	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	7762001	7786000	23999	2
Deletion	Chr9	20409479	20409481	2
Deletion	Chr5	25212110	25212111	1
Deletion	Chr6	30608001	30630000	21999	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes