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Mutant Information

Mutant Name	FN2449 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2449 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6944037 G-C Homo INTERGENIC
SBS Chr1 21396581 C-T Homo INTERGENIC
SBS Chr1 28757084 G-A Hetero INTERGENIC
SBS Chr1 42414663 C-G Homo INTERGENIC
SBS Chr2 20072328 A-G Hetero INTERGENIC
SBS Chr2 24124681 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g237500
SBS Chr2 31516531 C-G Homo INTERGENIC
SBS Chr3 943543 T-C Homo INTERGENIC
SBS Chr3 2434289 C-T Homo INTERGENIC
SBS Chr3 2711131 C-T Homo INTERGENIC
SBS Chr3 9990901 T-C Homo INTERGENIC
SBS Chr3 12289331 C-T Homo INTERGENIC
SBS Chr3 16415326 A-G Homo INTERGENIC
SBS Chr3 18668492 C-A Hetero INTERGENIC
SBS Chr3 18675822 G-T Hetero INTERGENIC
SBS Chr3 22858202 C-A Hetero INTRON
SBS Chr3 30086539 C-T Homo INTERGENIC
SBS Chr3 30086540 A-T Homo INTERGENIC
SBS Chr3 35923805 G-A Hetero INTERGENIC
SBS Chr4 4167801 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 4792660 C-G Hetero INTERGENIC
SBS Chr4 8837096 G-T Homo NON_SYNONYMOUS_CODING OsKitaake04g045500
SBS Chr4 14026942 T-A Homo INTERGENIC
SBS Chr4 18196602 T-A Homo INTERGENIC
SBS Chr4 26130540 A-G Homo NON_SYNONYMOUS_CODING OsKitaake04g184200
SBS Chr5 14306587 G-A Homo INTERGENIC
SBS Chr6 14328448 G-A Hetero INTERGENIC
SBS Chr6 15347347 A-G Hetero INTERGENIC
SBS Chr6 30061493 A-G Hetero INTERGENIC
SBS Chr7 1136746 A-G Homo INTERGENIC
SBS Chr7 1466718 G-A Hetero INTERGENIC
SBS Chr7 1626438 C-T Hetero INTRON
SBS Chr7 27188819 C-T Hetero INTERGENIC
SBS Chr8 7032934 T-C Hetero INTERGENIC
SBS Chr8 22155971 A-C Hetero INTERGENIC
SBS Chr8 22850908 G-A Homo INTERGENIC
SBS Chr8 24327414 G-A Hetero INTERGENIC
SBS Chr8 26332922 G-A Hetero INTERGENIC
SBS Chr9 2261780 A-G Hetero INTERGENIC
SBS Chr9 4082803 T-G Hetero INTERGENIC
SBS Chr9 8505169 G-A Hetero INTERGENIC
SBS Chr9 21501399 T-C Homo INTRON
SBS Chr10 4069373 C-G Hetero INTERGENIC
SBS Chr10 5947082 C-T Hetero INTERGENIC
SBS Chr10 12644460 C-G Hetero INTERGENIC
SBS Chr11 2345633 G-T Homo STOP_GAINED OsKitaake11g034000
SBS Chr12 11427651 C-G Homo INTERGENIC
SBS Chr12 21464394 C-T Homo INTERGENIC
SBS Chr12 23791475 C-T Homo INTERGENIC
SBS Chr12 23958343 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2345877 2345887 10
Deletion Chr5 2852308 2852310 2
Deletion Chr4 3854392 3854395 3
Deletion Chr3 9017950 9017982 32
Deletion Chr12 12784311 12784312 1
Deletion Chr5 13876816 13876822 6
Deletion Chr4 20667210 20667212 2
Deletion Chr8 27594001 27624000 29999 2
Deletion Chr3 27700858 27700860 2
Deletion Chr4 27854578 27854583 5
Deletion Chr4 28941334 28941344 10
Deletion Chr1 40113670 40113674 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 17434323 17434326 2
Insertion Chr7 24524126 24524129 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 26680534 27335416
Inversion Chr7 26680535 27335424

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 22141216 Chr1 26079895 OsKitaake01g253900
Translocation Chr7 22141218 Chr2 10619228 OsKitaake02g125500
Translocation Chr2 25361556 Chr1 26080451 OsKitaake01g253900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6944037	G-C	Homo	INTERGENIC
SBS	Chr1	21396581	C-T	Homo	INTERGENIC
SBS	Chr1	28757084	G-A	Hetero	INTERGENIC
SBS	Chr1	42414663	C-G	Homo	INTERGENIC
SBS	Chr2	20072328	A-G	Hetero	INTERGENIC
SBS	Chr2	24124681	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g237500
SBS	Chr2	31516531	C-G	Homo	INTERGENIC
SBS	Chr3	943543	T-C	Homo	INTERGENIC
SBS	Chr3	2434289	C-T	Homo	INTERGENIC
SBS	Chr3	2711131	C-T	Homo	INTERGENIC
SBS	Chr3	9990901	T-C	Homo	INTERGENIC
SBS	Chr3	12289331	C-T	Homo	INTERGENIC
SBS	Chr3	16415326	A-G	Homo	INTERGENIC
SBS	Chr3	18668492	C-A	Hetero	INTERGENIC
SBS	Chr3	18675822	G-T	Hetero	INTERGENIC
SBS	Chr3	22858202	C-A	Hetero	INTRON
SBS	Chr3	30086539	C-T	Homo	INTERGENIC
SBS	Chr3	30086540	A-T	Homo	INTERGENIC
SBS	Chr3	35923805	G-A	Hetero	INTERGENIC
SBS	Chr4	4167801	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	4792660	C-G	Hetero	INTERGENIC
SBS	Chr4	8837096	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g045500
SBS	Chr4	14026942	T-A	Homo	INTERGENIC
SBS	Chr4	18196602	T-A	Homo	INTERGENIC
SBS	Chr4	26130540	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g184200
SBS	Chr5	14306587	G-A	Homo	INTERGENIC
SBS	Chr6	14328448	G-A	Hetero	INTERGENIC
SBS	Chr6	15347347	A-G	Hetero	INTERGENIC
SBS	Chr6	30061493	A-G	Hetero	INTERGENIC
SBS	Chr7	1136746	A-G	Homo	INTERGENIC
SBS	Chr7	1466718	G-A	Hetero	INTERGENIC
SBS	Chr7	1626438	C-T	Hetero	INTRON
SBS	Chr7	27188819	C-T	Hetero	INTERGENIC
SBS	Chr8	7032934	T-C	Hetero	INTERGENIC
SBS	Chr8	22155971	A-C	Hetero	INTERGENIC
SBS	Chr8	22850908	G-A	Homo	INTERGENIC
SBS	Chr8	24327414	G-A	Hetero	INTERGENIC
SBS	Chr8	26332922	G-A	Hetero	INTERGENIC
SBS	Chr9	2261780	A-G	Hetero	INTERGENIC
SBS	Chr9	4082803	T-G	Hetero	INTERGENIC
SBS	Chr9	8505169	G-A	Hetero	INTERGENIC
SBS	Chr9	21501399	T-C	Homo	INTRON
SBS	Chr10	4069373	C-G	Hetero	INTERGENIC
SBS	Chr10	5947082	C-T	Hetero	INTERGENIC
SBS	Chr10	12644460	C-G	Hetero	INTERGENIC
SBS	Chr11	2345633	G-T	Homo	STOP_GAINED	OsKitaake11g034000
SBS	Chr12	11427651	C-G	Homo	INTERGENIC
SBS	Chr12	21464394	C-T	Homo	INTERGENIC
SBS	Chr12	23791475	C-T	Homo	INTERGENIC
SBS	Chr12	23958343	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2345877	2345887	10
Deletion	Chr5	2852308	2852310	2
Deletion	Chr4	3854392	3854395	3
Deletion	Chr3	9017950	9017982	32
Deletion	Chr12	12784311	12784312	1
Deletion	Chr5	13876816	13876822	6
Deletion	Chr4	20667210	20667212	2
Deletion	Chr8	27594001	27624000	29999	2
Deletion	Chr3	27700858	27700860	2
Deletion	Chr4	27854578	27854583	5
Deletion	Chr4	28941334	28941344	10
Deletion	Chr1	40113670	40113674	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	26680534	27335416
Inversion	Chr7	26680535	27335424

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes