Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN2450 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2450 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4765389 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 31727044 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 33916314 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 35749159 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 40190216 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 13267344 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 13530921 | G-T | Homo | INTRON | |
| SBS | Chr2 | 33557774 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 12479454 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g168500 |
| SBS | Chr3 | 12900061 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17180323 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 29221023 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 37270347 | C-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 3853301 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 6487983 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 7441329 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 12867457 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 20537021 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 21439438 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 3400952 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9338830 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 4640272 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 11220763 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 22277717 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 9569385 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 14442766 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15445895 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 20886463 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 18704464 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 5756012 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 9083945 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 18674097 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 23877163 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 4180387 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 12149474 | C-G | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 6227208 | 6227220 | 12 | |
| Deletion | Chr1 | 9662994 | 9662999 | 5 | OsKitaake01g123500 |
| Deletion | Chr7 | 10214531 | 10214533 | 2 | |
| Deletion | Chr2 | 25283926 | 25283939 | 13 | |
| Deletion | Chr8 | 26611168 | 26611170 | 2 | |
| Deletion | Chr1 | 40598996 | 40598997 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 14625648 | 14625651 | 2 | |
| Insertion | Chr12 | 26506519 | 26506522 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 3040743 | Chr4 | 944079 | OsKitaake04g007200 |