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Mutant Information

Mutant Name	FN2451 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2451 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14823	G-A	Hetero	INTERGENIC
SBS	Chr1	3813796	T-A	Hetero	UTR_3_PRIME
SBS	Chr1	15461245	G-T	Homo	UTR_3_PRIME
SBS	Chr1	15846363	A-G	Homo	INTERGENIC
SBS	Chr1	36706983	A-G	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake01g390100
SBS	Chr2	4905428	T-A	Hetero	INTERGENIC
SBS	Chr2	10071359	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g121300
SBS	Chr2	22094280	T-G	Hetero	INTERGENIC
SBS	Chr2	27207694	T-A	Hetero	INTERGENIC
SBS	Chr2	33619058	T-A	Hetero	INTERGENIC
SBS	Chr3	406748	T-C	Hetero	INTERGENIC
SBS	Chr3	5561771	C-G	Hetero	INTERGENIC
SBS	Chr3	9541427	T-C	Hetero	INTRON
SBS	Chr3	20111185	T-A	Hetero	INTERGENIC
SBS	Chr3	24244207	C-T	Hetero	INTERGENIC
SBS	Chr3	27847473	G-A	Hetero	INTERGENIC
SBS	Chr4	4278668	C-T	Hetero	INTRON
SBS	Chr4	6870847	G-A	Hetero	INTERGENIC
SBS	Chr4	13082981	C-A	Hetero	INTERGENIC
SBS	Chr4	15649074	C-A	Hetero	INTERGENIC
SBS	Chr4	26805254	T-A	Hetero	INTRON
SBS	Chr5	9401762	C-T	Hetero	INTERGENIC
SBS	Chr5	24731002	A-G	Hetero	INTERGENIC
SBS	Chr5	24844685	G-C	Homo	INTERGENIC
SBS	Chr6	12698286	C-T	Hetero	INTRON
SBS	Chr6	12698287	T-C	Hetero	INTRON
SBS	Chr6	29830144	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g279000
SBS	Chr7	3693700	C-T	Hetero	INTERGENIC
SBS	Chr7	9221102	C-T	Homo	INTRON
SBS	Chr7	10379469	C-A	Hetero	INTERGENIC
SBS	Chr7	20371630	C-T	Hetero	INTERGENIC
SBS	Chr8	9435872	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g086100
SBS	Chr8	15215966	T-A	Homo	INTERGENIC
SBS	Chr9	19770617	C-A	Homo	INTERGENIC
SBS	Chr10	573200	G-T	Hetero	INTERGENIC
SBS	Chr10	15719174	C-G	Hetero	INTERGENIC
SBS	Chr11	19385425	T-C	Hetero	INTRON
SBS	Chr11	27752195	G-A	Hetero	INTERGENIC
SBS	Chr11	29533337	C-T	Hetero	INTERGENIC
SBS	Chr12	6691035	C-A	Hetero	INTERGENIC
SBS	Chr12	9509730	C-T	Homo	INTERGENIC
SBS	Chr12	26966703	C-A	Hetero	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	619195	619205	10
Deletion	Chr7	1209509	1209514	5
Deletion	Chr5	2353441	2353445	4	OsKitaake05g026400
Deletion	Chr3	6148980	6148983	3
Deletion	Chr12	8463001	8475000	11999
Deletion	Chr9	9514275	9514279	4
Deletion	Chr3	9660691	9660693	2
Deletion	Chr4	9790603	9790604	1
Deletion	Chr7	10078928	10078938	10
Deletion	Chr10	10242544	10242547	3
Deletion	Chr7	11121560	11121569	9
Deletion	Chr6	12312667	12312673	6
Deletion	Chr5	16169950	16169953	3
Deletion	Chr11	17394602	17394607	5
Deletion	Chr1	19436648	19436649	1
Deletion	Chr10	22494623	22494624	1
Deletion	Chr5	24762648	24762653	5
Deletion	Chr4	27015692	27015693	1
Deletion	Chr3	27871684	27871685	1
Deletion	Chr2	36006157	36006161	4

Insertions: 5

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr2	20284169	20284177	7
Insertion	Chr2	35409679	35409682	2
Insertion	Chr4	1587051	1587055	3
Insertion	Chr8	13836723	13836725	1
Insertion	Chr8	16004741	16004744	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6148068	6169166	2
Inversion	Chr10	13343750	13379853	OsKitaake10g079900

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	10576958	Chr4	32627548
Translocation	Chr10	10587854	Chr4	32627543
Translocation	Chr8	16839568	Chr3	6148056	OsKitaake03g088000

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Variant Type

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Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

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Position 2

Number of Genes

Variant Type

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Chromosome

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