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Mutant Information

Mutant Name	FN2452 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2452 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10040622 T-C Hetero INTRON
SBS Chr1 10531761 A-G Hetero INTERGENIC
SBS Chr1 20430351 C-T Hetero INTERGENIC
SBS Chr1 23293288 G-A Hetero INTERGENIC
SBS Chr1 28229340 T-A Hetero INTERGENIC
SBS Chr1 34453822 T-C Hetero INTERGENIC
SBS Chr1 43493360 A-T Hetero UTR_3_PRIME
SBS Chr2 6592609 C-A Homo INTERGENIC
SBS Chr2 17113689 A-G Hetero INTERGENIC
SBS Chr2 23130902 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 11682149 A-G Hetero INTRON
SBS Chr3 12089062 T-C Hetero INTERGENIC
SBS Chr3 14392624 C-T Hetero INTRON
SBS Chr3 23230975 C-A Hetero INTERGENIC
SBS Chr4 2736308 C-T Hetero INTERGENIC
SBS Chr4 14062588 A-G Homo INTERGENIC
SBS Chr4 33915759 A-T Hetero INTERGENIC
SBS Chr5 12311689 G-A Hetero INTRON
SBS Chr5 14942181 C-G Hetero INTERGENIC
SBS Chr5 17599855 G-T Hetero INTERGENIC
SBS Chr5 30120049 C-T Hetero INTERGENIC
SBS Chr6 1849781 T-A Hetero INTERGENIC
SBS Chr6 11485636 T-G Homo INTRON
SBS Chr6 14319578 A-T Homo INTERGENIC
SBS Chr7 3402772 G-A Homo INTRON
SBS Chr7 19693805 G-A Homo UTR_5_PRIME
SBS Chr7 20636336 G-A Homo INTERGENIC
SBS Chr7 23717563 T-C Homo INTERGENIC
SBS Chr7 26569561 C-G Homo NON_SYNONYMOUS_CODING OsKitaake07g245800
SBS Chr7 29405400 G-A Hetero INTERGENIC
SBS Chr7 29405404 G-A Hetero INTERGENIC
SBS Chr8 454600 C-T Hetero INTRON
SBS Chr8 8693815 A-T Homo INTERGENIC
SBS Chr8 14133994 C-G Homo INTERGENIC
SBS Chr8 22161213 A-C Hetero INTERGENIC
SBS Chr8 22972349 C-A Hetero INTERGENIC
SBS Chr8 26823385 G-A Hetero INTERGENIC
SBS Chr8 27717377 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g231000
SBS Chr9 7411489 C-G Homo INTERGENIC
SBS Chr9 10516483 C-T Homo INTERGENIC
SBS Chr10 8702742 G-A Hetero INTERGENIC
SBS Chr10 13666342 C-G Hetero INTERGENIC
SBS Chr10 16031589 T-G Homo INTERGENIC
SBS Chr10 20975400 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 8469437 G-A Hetero INTERGENIC
SBS Chr12 10352978 T-G Hetero INTERGENIC
SBS Chr12 10352980 A-G Hetero INTERGENIC
SBS Chr12 10797549 G-A Hetero INTERGENIC
SBS Chr12 17672411 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g130200
SBS Chr12 21466694 G-T Hetero INTERGENIC
SBS Chr12 21466695 G-T Hetero INTERGENIC
SBS Chr12 25586888 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g210500

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 7578011 7578012 1
Deletion Chr5 7793001 7830000 36999 3
Deletion Chr3 10590270 10590274 4
Deletion Chr11 11088012 11088019 7
Deletion Chr8 12709001 12915000 205999 OsKitaake08g108900
Deletion Chr7 15483186 15483193 7
Deletion Chr8 16690001 16804000 113999 7
Deletion Chr8 21333512 21333514 2
Deletion Chr7 23597250 23597251 1
Deletion Chr4 25296158 25296164 6
Deletion Chr2 26645001 26690000 44999 6
Deletion Chr7 26706250 26706268 18
Deletion Chr8 27715717 27715719 2
Deletion Chr3 30667649 30667680 31 OsKitaake03g322400
Deletion Chr3 33744953 33744963 10
Deletion Chr1 33773885 33773886 1
Deletion Chr1 39504644 39504647 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 1373469 1373476 6

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 6278416 6581792 2
Inversion Chr2 6278449 6581796 2
Inversion Chr11 29394218 29401693
Inversion Chr11 29394227 29401708
Inversion Chr2 31717436 31950218 OsKitaake02g322800
Inversion Chr2 31717441 31950220 OsKitaake02g322800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10040622	T-C	Hetero	INTRON
SBS	Chr1	10531761	A-G	Hetero	INTERGENIC
SBS	Chr1	20430351	C-T	Hetero	INTERGENIC
SBS	Chr1	23293288	G-A	Hetero	INTERGENIC
SBS	Chr1	28229340	T-A	Hetero	INTERGENIC
SBS	Chr1	34453822	T-C	Hetero	INTERGENIC
SBS	Chr1	43493360	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	6592609	C-A	Homo	INTERGENIC
SBS	Chr2	17113689	A-G	Hetero	INTERGENIC
SBS	Chr2	23130902	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	11682149	A-G	Hetero	INTRON
SBS	Chr3	12089062	T-C	Hetero	INTERGENIC
SBS	Chr3	14392624	C-T	Hetero	INTRON
SBS	Chr3	23230975	C-A	Hetero	INTERGENIC
SBS	Chr4	2736308	C-T	Hetero	INTERGENIC
SBS	Chr4	14062588	A-G	Homo	INTERGENIC
SBS	Chr4	33915759	A-T	Hetero	INTERGENIC
SBS	Chr5	12311689	G-A	Hetero	INTRON
SBS	Chr5	14942181	C-G	Hetero	INTERGENIC
SBS	Chr5	17599855	G-T	Hetero	INTERGENIC
SBS	Chr5	30120049	C-T	Hetero	INTERGENIC
SBS	Chr6	1849781	T-A	Hetero	INTERGENIC
SBS	Chr6	11485636	T-G	Homo	INTRON
SBS	Chr6	14319578	A-T	Homo	INTERGENIC
SBS	Chr7	3402772	G-A	Homo	INTRON
SBS	Chr7	19693805	G-A	Homo	UTR_5_PRIME
SBS	Chr7	20636336	G-A	Homo	INTERGENIC
SBS	Chr7	23717563	T-C	Homo	INTERGENIC
SBS	Chr7	26569561	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g245800
SBS	Chr7	29405400	G-A	Hetero	INTERGENIC
SBS	Chr7	29405404	G-A	Hetero	INTERGENIC
SBS	Chr8	454600	C-T	Hetero	INTRON
SBS	Chr8	8693815	A-T	Homo	INTERGENIC
SBS	Chr8	14133994	C-G	Homo	INTERGENIC
SBS	Chr8	22161213	A-C	Hetero	INTERGENIC
SBS	Chr8	22972349	C-A	Hetero	INTERGENIC
SBS	Chr8	26823385	G-A	Hetero	INTERGENIC
SBS	Chr8	27717377	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g231000
SBS	Chr9	7411489	C-G	Homo	INTERGENIC
SBS	Chr9	10516483	C-T	Homo	INTERGENIC
SBS	Chr10	8702742	G-A	Hetero	INTERGENIC
SBS	Chr10	13666342	C-G	Hetero	INTERGENIC
SBS	Chr10	16031589	T-G	Homo	INTERGENIC
SBS	Chr10	20975400	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	8469437	G-A	Hetero	INTERGENIC
SBS	Chr12	10352978	T-G	Hetero	INTERGENIC
SBS	Chr12	10352980	A-G	Hetero	INTERGENIC
SBS	Chr12	10797549	G-A	Hetero	INTERGENIC
SBS	Chr12	17672411	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g130200
SBS	Chr12	21466694	G-T	Hetero	INTERGENIC
SBS	Chr12	21466695	G-T	Hetero	INTERGENIC
SBS	Chr12	25586888	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g210500

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	7578011	7578012	1
Deletion	Chr5	7793001	7830000	36999	3
Deletion	Chr3	10590270	10590274	4
Deletion	Chr11	11088012	11088019	7
Deletion	Chr8	12709001	12915000	205999	OsKitaake08g108900
Deletion	Chr7	15483186	15483193	7
Deletion	Chr8	16690001	16804000	113999	7
Deletion	Chr8	21333512	21333514	2
Deletion	Chr7	23597250	23597251	1
Deletion	Chr4	25296158	25296164	6
Deletion	Chr2	26645001	26690000	44999	6
Deletion	Chr7	26706250	26706268	18
Deletion	Chr8	27715717	27715719	2
Deletion	Chr3	30667649	30667680	31	OsKitaake03g322400
Deletion	Chr3	33744953	33744963	10
Deletion	Chr1	33773885	33773886	1
Deletion	Chr1	39504644	39504647	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6278416	6581792	2
Inversion	Chr2	6278449	6581796	2
Inversion	Chr11	29394218	29401693
Inversion	Chr11	29394227	29401708
Inversion	Chr2	31717436	31950218	OsKitaake02g322800
Inversion	Chr2	31717441	31950220	OsKitaake02g322800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes