Search Kitaake

Mutant Information

Mutant Name	FN2453 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2453 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3247155 G-A Homo INTERGENIC
SBS Chr1 10789118 C-A Homo INTERGENIC
SBS Chr1 40571888 G-A Hetero INTERGENIC
SBS Chr1 43336422 C-T Hetero INTRON
SBS Chr2 3511706 C-T Hetero INTERGENIC
SBS Chr2 4880695 G-A Hetero UTR_5_PRIME
SBS Chr2 28190556 T-A Hetero INTERGENIC
SBS Chr2 34029149 A-G Homo INTERGENIC
SBS Chr3 10439267 C-T Hetero INTERGENIC
SBS Chr3 26712727 G-T Hetero INTERGENIC
SBS Chr3 31036145 G-C Homo INTRON
SBS Chr4 12774046 C-T Hetero INTRON
SBS Chr4 15243631 T-G Hetero INTERGENIC
SBS Chr4 20878712 A-G Hetero UTR_5_PRIME
SBS Chr5 201383 T-C Hetero INTERGENIC
SBS Chr5 6150625 C-A Hetero INTERGENIC
SBS Chr5 11578723 C-G Hetero INTERGENIC
SBS Chr6 24256296 T-A Hetero INTERGENIC
SBS Chr7 1349921 A-G Hetero INTERGENIC
SBS Chr7 23849653 C-T Hetero INTERGENIC
SBS Chr8 11339524 C-A Homo STOP_GAINED OsKitaake08g100400
SBS Chr9 7449863 T-C Hetero INTERGENIC
SBS Chr10 3414702 T-C Hetero INTERGENIC
SBS Chr10 5407366 G-A Hetero INTERGENIC
SBS Chr10 9622100 G-A Hetero INTERGENIC
SBS Chr10 11907667 G-A Hetero INTERGENIC
SBS Chr10 13066515 T-A Hetero INTERGENIC
SBS Chr11 815181 A-G Homo INTRON
SBS Chr11 5238270 C-T Homo INTERGENIC
SBS Chr11 13541337 A-C Homo INTERGENIC
SBS Chr12 15530837 G-T Hetero INTERGENIC
SBS Chr12 22043651 C-G Hetero INTERGENIC
SBS Chr12 22097840 C-T Hetero INTERGENIC
SBS Chr12 26577492 T-C Hetero UTR_3_PRIME

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 4372438 4372447 9
Deletion Chr3 7513097 7513100 3
Deletion Chr9 8104533 8104562 29
Deletion Chr3 10132839 10132843 4
Deletion Chr12 10303325 10303333 8 OsKitaake12g096600
Deletion Chr10 10519703 10519705 2
Deletion Chr1 10557001 10578000 20999 OsKitaake01g131900
Deletion Chr9 15950274 15950275 1
Deletion Chr10 18863635 18863636 1
Deletion Chr4 19955238 19955239 1
Deletion Chr1 21046001 21261000 214999 10
Deletion Chr1 21910414 21910427 13
Deletion Chr2 33405393 33405405 12

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 12687326 12687329 2
Insertion Chr3 21495425 21495430 4
Insertion Chr4 76140 76144 3
Insertion Chr6 12650871 12650874 2
Insertion Chr7 19339862 19339865 2
Insertion Chr11 17215403 17215406 2
Insertion Chr11 19899294 19899297 2
Insertion Chr12 4249578 4249581 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 8642115 8976637
Inversion Chr2 8642120 8976638

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 813348 Chr6 16691516 OsKitaake11g010500
Translocation Chr11 813352 Chr6 16691755 OsKitaake11g010500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3247155	G-A	Homo	INTERGENIC
SBS	Chr1	10789118	C-A	Homo	INTERGENIC
SBS	Chr1	40571888	G-A	Hetero	INTERGENIC
SBS	Chr1	43336422	C-T	Hetero	INTRON
SBS	Chr2	3511706	C-T	Hetero	INTERGENIC
SBS	Chr2	4880695	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	28190556	T-A	Hetero	INTERGENIC
SBS	Chr2	34029149	A-G	Homo	INTERGENIC
SBS	Chr3	10439267	C-T	Hetero	INTERGENIC
SBS	Chr3	26712727	G-T	Hetero	INTERGENIC
SBS	Chr3	31036145	G-C	Homo	INTRON
SBS	Chr4	12774046	C-T	Hetero	INTRON
SBS	Chr4	15243631	T-G	Hetero	INTERGENIC
SBS	Chr4	20878712	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	201383	T-C	Hetero	INTERGENIC
SBS	Chr5	6150625	C-A	Hetero	INTERGENIC
SBS	Chr5	11578723	C-G	Hetero	INTERGENIC
SBS	Chr6	24256296	T-A	Hetero	INTERGENIC
SBS	Chr7	1349921	A-G	Hetero	INTERGENIC
SBS	Chr7	23849653	C-T	Hetero	INTERGENIC
SBS	Chr8	11339524	C-A	Homo	STOP_GAINED	OsKitaake08g100400
SBS	Chr9	7449863	T-C	Hetero	INTERGENIC
SBS	Chr10	3414702	T-C	Hetero	INTERGENIC
SBS	Chr10	5407366	G-A	Hetero	INTERGENIC
SBS	Chr10	9622100	G-A	Hetero	INTERGENIC
SBS	Chr10	11907667	G-A	Hetero	INTERGENIC
SBS	Chr10	13066515	T-A	Hetero	INTERGENIC
SBS	Chr11	815181	A-G	Homo	INTRON
SBS	Chr11	5238270	C-T	Homo	INTERGENIC
SBS	Chr11	13541337	A-C	Homo	INTERGENIC
SBS	Chr12	15530837	G-T	Hetero	INTERGENIC
SBS	Chr12	22043651	C-G	Hetero	INTERGENIC
SBS	Chr12	22097840	C-T	Hetero	INTERGENIC
SBS	Chr12	26577492	T-C	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	4372438	4372447	9
Deletion	Chr3	7513097	7513100	3
Deletion	Chr9	8104533	8104562	29
Deletion	Chr3	10132839	10132843	4
Deletion	Chr12	10303325	10303333	8	OsKitaake12g096600
Deletion	Chr10	10519703	10519705	2
Deletion	Chr1	10557001	10578000	20999	OsKitaake01g131900
Deletion	Chr9	15950274	15950275	1
Deletion	Chr10	18863635	18863636	1
Deletion	Chr4	19955238	19955239	1
Deletion	Chr1	21046001	21261000	214999	10
Deletion	Chr1	21910414	21910427	13
Deletion	Chr2	33405393	33405405	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8642115	8976637
Inversion	Chr2	8642120	8976638

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes