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Mutant Information

Mutant Name	FN2454 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2454 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3376791 C-T Hetero INTERGENIC
SBS Chr1 6464014 A-G Hetero INTERGENIC
SBS Chr1 9045637 G-A Hetero SPLICE_SITE_DONOR OsKitaake01g116300
SBS Chr1 12863708 A-G Hetero INTERGENIC
SBS Chr1 20787540 G-A Hetero INTERGENIC
SBS Chr1 22679328 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g216900
SBS Chr1 32069626 C-A Hetero INTERGENIC
SBS Chr2 5273945 G-A Hetero INTERGENIC
SBS Chr2 17839445 A-G Hetero INTERGENIC
SBS Chr2 35225107 G-A Hetero INTRON
SBS Chr3 9509078 T-C Hetero INTRON
SBS Chr3 26963973 T-A Hetero INTERGENIC
SBS Chr3 30597745 G-A Hetero INTERGENIC
SBS Chr3 31070741 G-T Hetero INTRON
SBS Chr4 10068563 C-T Hetero INTERGENIC
SBS Chr4 13323676 T-C Homo INTERGENIC
SBS Chr4 13323679 C-T Homo INTERGENIC
SBS Chr4 14146572 T-C Hetero INTERGENIC
SBS Chr4 14852248 T-C Hetero INTERGENIC
SBS Chr4 30527651 G-A Hetero INTERGENIC
SBS Chr4 33504149 G-A Hetero INTERGENIC
SBS Chr6 721771 G-T Homo INTERGENIC
SBS Chr6 26434224 G-A Hetero INTERGENIC
SBS Chr6 28471486 C-T Hetero INTERGENIC
SBS Chr8 6234695 A-T Hetero INTERGENIC
SBS Chr8 19291134 C-A Homo INTERGENIC
SBS Chr8 20916413 G-C Homo INTERGENIC
SBS Chr9 471610 G-A Hetero INTERGENIC
SBS Chr9 3891713 C-G Hetero INTERGENIC
SBS Chr9 9539946 A-C Hetero INTERGENIC
SBS Chr9 17152133 G-A Homo INTERGENIC
SBS Chr10 6172359 A-G Hetero INTERGENIC
SBS Chr10 12255585 C-A Hetero INTRON
SBS Chr10 13975995 C-G Hetero INTERGENIC
SBS Chr11 465283 T-C Hetero INTERGENIC
SBS Chr12 689071 G-T Hetero INTERGENIC
SBS Chr12 9916875 T-C Hetero INTERGENIC
SBS Chr12 10619497 G-T Hetero INTERGENIC
SBS Chr12 22965679 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g182300
SBS Chr12 23360212 T-C Hetero SYNONYMOUS_CODING

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 4587930 4587936 6
Deletion Chr2 4844001 4893000 48999 16
Deletion Chr2 5796246 5796256 10
Deletion Chr6 10171518 10171522 4
Deletion Chr3 11506447 11506452 5
Deletion Chr2 11899001 11989000 89999 5
Deletion Chr2 11995001 12028000 32999 2
Deletion Chr7 16723075 16723078 3
Deletion Chr9 17089373 17089380 7
Deletion Chr4 18669600 18669613 13
Deletion Chr8 18940951 18940964 13
Deletion Chr8 19706045 19706051 6
Deletion Chr3 24026389 24026391 2
Deletion Chr4 26342298 26342318 20
Deletion Chr4 27331880 27331881 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 10361110 10596083 OsKitaake02g123600
Inversion Chr2 11804554 11899252
Inversion Chr7 14403742 15013453 OsKitaake07g125600
Inversion Chr5 17144541 17155261
Inversion Chr5 17144550 17155266

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 6338136 Chr2 4844225 2
Translocation Chr12 6338140 Chr2 4844487 2
Translocation Chr7 14403730 Chr6 19455357
Translocation Chr7 15013442 Chr6 19456995 OsKitaake07g125600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3376791	C-T	Hetero	INTERGENIC
SBS	Chr1	6464014	A-G	Hetero	INTERGENIC
SBS	Chr1	9045637	G-A	Hetero	SPLICE_SITE_DONOR	OsKitaake01g116300
SBS	Chr1	12863708	A-G	Hetero	INTERGENIC
SBS	Chr1	20787540	G-A	Hetero	INTERGENIC
SBS	Chr1	22679328	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g216900
SBS	Chr1	32069626	C-A	Hetero	INTERGENIC
SBS	Chr2	5273945	G-A	Hetero	INTERGENIC
SBS	Chr2	17839445	A-G	Hetero	INTERGENIC
SBS	Chr2	35225107	G-A	Hetero	INTRON
SBS	Chr3	9509078	T-C	Hetero	INTRON
SBS	Chr3	26963973	T-A	Hetero	INTERGENIC
SBS	Chr3	30597745	G-A	Hetero	INTERGENIC
SBS	Chr3	31070741	G-T	Hetero	INTRON
SBS	Chr4	10068563	C-T	Hetero	INTERGENIC
SBS	Chr4	13323676	T-C	Homo	INTERGENIC
SBS	Chr4	13323679	C-T	Homo	INTERGENIC
SBS	Chr4	14146572	T-C	Hetero	INTERGENIC
SBS	Chr4	14852248	T-C	Hetero	INTERGENIC
SBS	Chr4	30527651	G-A	Hetero	INTERGENIC
SBS	Chr4	33504149	G-A	Hetero	INTERGENIC
SBS	Chr6	721771	G-T	Homo	INTERGENIC
SBS	Chr6	26434224	G-A	Hetero	INTERGENIC
SBS	Chr6	28471486	C-T	Hetero	INTERGENIC
SBS	Chr8	6234695	A-T	Hetero	INTERGENIC
SBS	Chr8	19291134	C-A	Homo	INTERGENIC
SBS	Chr8	20916413	G-C	Homo	INTERGENIC
SBS	Chr9	471610	G-A	Hetero	INTERGENIC
SBS	Chr9	3891713	C-G	Hetero	INTERGENIC
SBS	Chr9	9539946	A-C	Hetero	INTERGENIC
SBS	Chr9	17152133	G-A	Homo	INTERGENIC
SBS	Chr10	6172359	A-G	Hetero	INTERGENIC
SBS	Chr10	12255585	C-A	Hetero	INTRON
SBS	Chr10	13975995	C-G	Hetero	INTERGENIC
SBS	Chr11	465283	T-C	Hetero	INTERGENIC
SBS	Chr12	689071	G-T	Hetero	INTERGENIC
SBS	Chr12	9916875	T-C	Hetero	INTERGENIC
SBS	Chr12	10619497	G-T	Hetero	INTERGENIC
SBS	Chr12	22965679	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g182300
SBS	Chr12	23360212	T-C	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	4587930	4587936	6
Deletion	Chr2	4844001	4893000	48999	16
Deletion	Chr2	5796246	5796256	10
Deletion	Chr6	10171518	10171522	4
Deletion	Chr3	11506447	11506452	5
Deletion	Chr2	11899001	11989000	89999	5
Deletion	Chr2	11995001	12028000	32999	2
Deletion	Chr7	16723075	16723078	3
Deletion	Chr9	17089373	17089380	7
Deletion	Chr4	18669600	18669613	13
Deletion	Chr8	18940951	18940964	13
Deletion	Chr8	19706045	19706051	6
Deletion	Chr3	24026389	24026391	2
Deletion	Chr4	26342298	26342318	20
Deletion	Chr4	27331880	27331881	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	10361110	10596083	OsKitaake02g123600
Inversion	Chr2	11804554	11899252
Inversion	Chr7	14403742	15013453	OsKitaake07g125600
Inversion	Chr5	17144541	17155261
Inversion	Chr5	17144550	17155266

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes