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Mutant Information

Mutant Name	FN2455 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2455 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 140343 G-T Hetero INTERGENIC
SBS Chr1 12864037 C-T Hetero INTERGENIC
SBS Chr1 18143150 A-T Hetero INTERGENIC
SBS Chr1 18143151 A-T Hetero INTERGENIC
SBS Chr1 19350207 T-A Hetero INTERGENIC
SBS Chr1 31486825 C-A Hetero INTERGENIC
SBS Chr1 42041754 G-T Homo INTERGENIC
SBS Chr2 5504880 C-T Hetero UTR_3_PRIME
SBS Chr2 8719430 G-A Hetero INTERGENIC
SBS Chr2 16547788 G-C Hetero INTERGENIC
SBS Chr2 18323476 G-A Homo INTERGENIC
SBS Chr2 27877487 G-A Hetero INTERGENIC
SBS Chr2 36476894 T-C Homo NON_SYNONYMOUS_CODING OsKitaake02g387100
SBS Chr3 9218511 A-G Hetero INTERGENIC
SBS Chr3 18697666 T-A Hetero INTERGENIC
SBS Chr3 22207673 T-G Hetero INTERGENIC
SBS Chr3 24415738 A-G Hetero INTERGENIC
SBS Chr3 30405121 G-T Hetero INTERGENIC
SBS Chr4 3448466 G-T Homo INTERGENIC
SBS Chr4 9014650 C-A Hetero INTERGENIC
SBS Chr4 14408368 G-A Hetero INTERGENIC
SBS Chr4 17382013 T-G Homo INTERGENIC
SBS Chr4 20925202 G-A Hetero INTERGENIC
SBS Chr4 24009496 T-A Hetero INTRON
SBS Chr4 29059588 C-T Hetero INTERGENIC
SBS Chr5 11485814 A-T Hetero INTERGENIC
SBS Chr5 16994687 G-A Hetero INTERGENIC
SBS Chr5 16995262 C-T Hetero INTERGENIC
SBS Chr5 24931050 G-A Hetero INTERGENIC
SBS Chr6 4262222 G-A Hetero INTERGENIC
SBS Chr6 8500309 C-T Hetero INTERGENIC
SBS Chr6 8647193 C-T Hetero INTERGENIC
SBS Chr7 23190753 A-G Homo INTERGENIC
SBS Chr7 24392138 T-G Homo INTRON
SBS Chr7 26224024 G-C Hetero INTRON
SBS Chr7 28081620 C-A Hetero INTERGENIC
SBS Chr7 28081621 G-A Hetero INTERGENIC
SBS Chr9 21532857 G-T Hetero INTERGENIC
SBS Chr10 4565434 A-G Hetero INTRON
SBS Chr10 12541628 G-A Hetero INTERGENIC
SBS Chr10 18644733 G-T Hetero INTERGENIC
SBS Chr10 22583851 A-T Homo INTERGENIC
SBS Chr12 2095916 G-A Hetero INTERGENIC
SBS Chr12 3636295 T-C Hetero INTERGENIC
SBS Chr12 12880137 C-T Hetero INTERGENIC
SBS Chr12 13695502 A-T Hetero INTERGENIC
SBS Chr12 21437398 C-A Hetero INTERGENIC
SBS Chr12 23730649 G-T Hetero INTERGENIC
SBS Chr12 26962552 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 974370 974371 1
Deletion Chr10 2418312 2418313 1
Deletion Chr9 5117393 5117403 10
Deletion Chr9 7397830 7397845 15
Deletion Chr6 7489307 7489308 1
Deletion Chr1 8126265 8126268 3
Deletion Chr8 11300001 11338000 37999 3
Deletion Chr8 13714793 13714804 11
Deletion Chr8 14457746 14457747 1
Deletion Chr6 15137790 15137796 6
Deletion Chr1 18422464 18422466 2
Deletion Chr8 19393814 19393828 14
Deletion Chr9 21688814 21688816 2 OsKitaake09g190800
Deletion Chr3 29965754 29965756 2
Deletion Chr2 32545937 32545957 20
Deletion Chr3 34336822 34336835 13

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 132331 132334 2
Insertion Chr5 14329035 14329039 3
Insertion Chr6 5878477 5878480 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 14134194 14145859
Inversion Chr7 14134212 14145858

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 709039 Chr3 14879096
Translocation Chr10 709312 Chr3 14879090
Translocation Chr8 11302266 Chr7 4366970
Translocation Chr8 11302545 Chr7 4366970
Translocation Chr3 31365621 Chr2 35836949 2
Translocation Chr3 31365622 Chr2 35836948 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	140343	G-T	Hetero	INTERGENIC
SBS	Chr1	12864037	C-T	Hetero	INTERGENIC
SBS	Chr1	18143150	A-T	Hetero	INTERGENIC
SBS	Chr1	18143151	A-T	Hetero	INTERGENIC
SBS	Chr1	19350207	T-A	Hetero	INTERGENIC
SBS	Chr1	31486825	C-A	Hetero	INTERGENIC
SBS	Chr1	42041754	G-T	Homo	INTERGENIC
SBS	Chr2	5504880	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	8719430	G-A	Hetero	INTERGENIC
SBS	Chr2	16547788	G-C	Hetero	INTERGENIC
SBS	Chr2	18323476	G-A	Homo	INTERGENIC
SBS	Chr2	27877487	G-A	Hetero	INTERGENIC
SBS	Chr2	36476894	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g387100
SBS	Chr3	9218511	A-G	Hetero	INTERGENIC
SBS	Chr3	18697666	T-A	Hetero	INTERGENIC
SBS	Chr3	22207673	T-G	Hetero	INTERGENIC
SBS	Chr3	24415738	A-G	Hetero	INTERGENIC
SBS	Chr3	30405121	G-T	Hetero	INTERGENIC
SBS	Chr4	3448466	G-T	Homo	INTERGENIC
SBS	Chr4	9014650	C-A	Hetero	INTERGENIC
SBS	Chr4	14408368	G-A	Hetero	INTERGENIC
SBS	Chr4	17382013	T-G	Homo	INTERGENIC
SBS	Chr4	20925202	G-A	Hetero	INTERGENIC
SBS	Chr4	24009496	T-A	Hetero	INTRON
SBS	Chr4	29059588	C-T	Hetero	INTERGENIC
SBS	Chr5	11485814	A-T	Hetero	INTERGENIC
SBS	Chr5	16994687	G-A	Hetero	INTERGENIC
SBS	Chr5	16995262	C-T	Hetero	INTERGENIC
SBS	Chr5	24931050	G-A	Hetero	INTERGENIC
SBS	Chr6	4262222	G-A	Hetero	INTERGENIC
SBS	Chr6	8500309	C-T	Hetero	INTERGENIC
SBS	Chr6	8647193	C-T	Hetero	INTERGENIC
SBS	Chr7	23190753	A-G	Homo	INTERGENIC
SBS	Chr7	24392138	T-G	Homo	INTRON
SBS	Chr7	26224024	G-C	Hetero	INTRON
SBS	Chr7	28081620	C-A	Hetero	INTERGENIC
SBS	Chr7	28081621	G-A	Hetero	INTERGENIC
SBS	Chr9	21532857	G-T	Hetero	INTERGENIC
SBS	Chr10	4565434	A-G	Hetero	INTRON
SBS	Chr10	12541628	G-A	Hetero	INTERGENIC
SBS	Chr10	18644733	G-T	Hetero	INTERGENIC
SBS	Chr10	22583851	A-T	Homo	INTERGENIC
SBS	Chr12	2095916	G-A	Hetero	INTERGENIC
SBS	Chr12	3636295	T-C	Hetero	INTERGENIC
SBS	Chr12	12880137	C-T	Hetero	INTERGENIC
SBS	Chr12	13695502	A-T	Hetero	INTERGENIC
SBS	Chr12	21437398	C-A	Hetero	INTERGENIC
SBS	Chr12	23730649	G-T	Hetero	INTERGENIC
SBS	Chr12	26962552	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	974370	974371	1
Deletion	Chr10	2418312	2418313	1
Deletion	Chr9	5117393	5117403	10
Deletion	Chr9	7397830	7397845	15
Deletion	Chr6	7489307	7489308	1
Deletion	Chr1	8126265	8126268	3
Deletion	Chr8	11300001	11338000	37999	3
Deletion	Chr8	13714793	13714804	11
Deletion	Chr8	14457746	14457747	1
Deletion	Chr6	15137790	15137796	6
Deletion	Chr1	18422464	18422466	2
Deletion	Chr8	19393814	19393828	14
Deletion	Chr9	21688814	21688816	2	OsKitaake09g190800
Deletion	Chr3	29965754	29965756	2
Deletion	Chr2	32545937	32545957	20
Deletion	Chr3	34336822	34336835	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14134194	14145859
Inversion	Chr7	14134212	14145858

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes