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Mutant Information

Mutant Name	FN2456 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2456 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1092191 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g012800
SBS Chr1 2711542 C-T Hetero UTR_3_PRIME
SBS Chr1 13615827 T-C Hetero INTERGENIC
SBS Chr1 29057158 C-G Hetero INTERGENIC
SBS Chr2 7604834 A-G Hetero UTR_3_PRIME
SBS Chr2 18644834 G-A Homo INTERGENIC
SBS Chr2 19498292 A-T Homo INTERGENIC
SBS Chr2 33868044 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g350600
SBS Chr2 35963675 G-T Hetero INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 8555100 G-C Hetero INTERGENIC
SBS Chr3 13294808 A-T Hetero INTERGENIC
SBS Chr3 18228417 T-G Hetero INTRON
SBS Chr3 19626093 G-A Hetero INTERGENIC
SBS Chr3 25698827 G-T Hetero INTRON
SBS Chr3 33246016 T-C Hetero INTRON
SBS Chr4 2752091 G-A Hetero INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr4 21701247 T-C Homo INTERGENIC
SBS Chr4 25549630 C-A Homo NON_SYNONYMOUS_CODING OsKitaake04g176100
SBS Chr4 30203352 T-C Homo INTERGENIC
SBS Chr4 31942260 A-T Hetero INTRON
SBS Chr5 13920176 G-A Hetero INTERGENIC
SBS Chr5 14934719 G-A Hetero INTERGENIC
SBS Chr5 20115830 C-T Hetero INTERGENIC
SBS Chr5 20421967 T-A Hetero INTERGENIC
SBS Chr6 1316132 G-A Hetero INTERGENIC
SBS Chr6 25377354 G-A Homo INTERGENIC
SBS Chr7 2386620 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g032450
SBS Chr7 13924104 G-A Hetero INTERGENIC
SBS Chr7 18625661 G-T Hetero INTERGENIC
SBS Chr7 22620937 T-C Hetero INTERGENIC
SBS Chr7 22690042 C-T Hetero INTERGENIC
SBS Chr7 24391887 A-T Hetero SYNONYMOUS_CODING
SBS Chr7 26668618 G-T Hetero INTRON
SBS Chr7 27576298 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g256700
SBS Chr8 7158893 A-C Hetero INTERGENIC
SBS Chr8 10437573 C-A Hetero INTERGENIC
SBS Chr9 20362019 T-A Hetero INTERGENIC
SBS Chr11 6364474 C-A Hetero INTERGENIC
SBS Chr11 14674067 G-A Homo INTERGENIC
SBS Chr11 17042544 G-A Hetero INTRON
SBS Chr12 5616915 C-T Hetero INTRON
SBS Chr12 7770010 T-C Homo INTERGENIC
SBS Chr12 16606142 T-C Hetero INTERGENIC
SBS Chr12 20196580 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4349016 4349017 1
Deletion Chr8 5185737 5185742 5
Deletion Chr9 5224841 5224843 2
Deletion Chr7 8165312 8165403 91 OsKitaake07g089300
Deletion Chr2 13430777 13430792 15
Deletion Chr7 14062001 14081000 18999 2
Deletion Chr4 15885001 15916000 30999 4
Deletion Chr4 15927001 15949000 21999 2
Deletion Chr6 20998920 20998922 2
Deletion Chr4 23353884 23353887 3
Deletion Chr4 25115447 25115454 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 5277268 5277271 2
Insertion Chr9 9739340 9739344 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 20846184 21198661
Inversion Chr7 20846194 21198673
Inversion Chr1 29410541 29454242 OsKitaake01g287900
Inversion Chr1 29410553 29454248 OsKitaake01g287900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1092191	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g012800
SBS	Chr1	2711542	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	13615827	T-C	Hetero	INTERGENIC
SBS	Chr1	29057158	C-G	Hetero	INTERGENIC
SBS	Chr2	7604834	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	18644834	G-A	Homo	INTERGENIC
SBS	Chr2	19498292	A-T	Homo	INTERGENIC
SBS	Chr2	33868044	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g350600
SBS	Chr2	35963675	G-T	Hetero	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	8555100	G-C	Hetero	INTERGENIC
SBS	Chr3	13294808	A-T	Hetero	INTERGENIC
SBS	Chr3	18228417	T-G	Hetero	INTRON
SBS	Chr3	19626093	G-A	Hetero	INTERGENIC
SBS	Chr3	25698827	G-T	Hetero	INTRON
SBS	Chr3	33246016	T-C	Hetero	INTRON
SBS	Chr4	2752091	G-A	Hetero	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr4	21701247	T-C	Homo	INTERGENIC
SBS	Chr4	25549630	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g176100
SBS	Chr4	30203352	T-C	Homo	INTERGENIC
SBS	Chr4	31942260	A-T	Hetero	INTRON
SBS	Chr5	13920176	G-A	Hetero	INTERGENIC
SBS	Chr5	14934719	G-A	Hetero	INTERGENIC
SBS	Chr5	20115830	C-T	Hetero	INTERGENIC
SBS	Chr5	20421967	T-A	Hetero	INTERGENIC
SBS	Chr6	1316132	G-A	Hetero	INTERGENIC
SBS	Chr6	25377354	G-A	Homo	INTERGENIC
SBS	Chr7	2386620	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g032450
SBS	Chr7	13924104	G-A	Hetero	INTERGENIC
SBS	Chr7	18625661	G-T	Hetero	INTERGENIC
SBS	Chr7	22620937	T-C	Hetero	INTERGENIC
SBS	Chr7	22690042	C-T	Hetero	INTERGENIC
SBS	Chr7	24391887	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	26668618	G-T	Hetero	INTRON
SBS	Chr7	27576298	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g256700
SBS	Chr8	7158893	A-C	Hetero	INTERGENIC
SBS	Chr8	10437573	C-A	Hetero	INTERGENIC
SBS	Chr9	20362019	T-A	Hetero	INTERGENIC
SBS	Chr11	6364474	C-A	Hetero	INTERGENIC
SBS	Chr11	14674067	G-A	Homo	INTERGENIC
SBS	Chr11	17042544	G-A	Hetero	INTRON
SBS	Chr12	5616915	C-T	Hetero	INTRON
SBS	Chr12	7770010	T-C	Homo	INTERGENIC
SBS	Chr12	16606142	T-C	Hetero	INTERGENIC
SBS	Chr12	20196580	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4349016	4349017	1
Deletion	Chr8	5185737	5185742	5
Deletion	Chr9	5224841	5224843	2
Deletion	Chr7	8165312	8165403	91	OsKitaake07g089300
Deletion	Chr2	13430777	13430792	15
Deletion	Chr7	14062001	14081000	18999	2
Deletion	Chr4	15885001	15916000	30999	4
Deletion	Chr4	15927001	15949000	21999	2
Deletion	Chr6	20998920	20998922	2
Deletion	Chr4	23353884	23353887	3
Deletion	Chr4	25115447	25115454	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	20846184	21198661
Inversion	Chr7	20846194	21198673
Inversion	Chr1	29410541	29454242	OsKitaake01g287900
Inversion	Chr1	29410553	29454248	OsKitaake01g287900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes