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Mutant Information

Mutant Name	FN2457 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2457 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9917692 T-C Hetero INTERGENIC
SBS Chr1 11018938 G-T Hetero INTERGENIC
SBS Chr1 30922420 C-A Hetero INTERGENIC
SBS Chr3 13353634 G-A Homo INTRON
SBS Chr3 21107251 T-C Hetero INTERGENIC
SBS Chr3 23359870 C-T Hetero INTERGENIC
SBS Chr4 21840940 A-C Homo INTRON
SBS Chr5 5039161 T-A Hetero INTERGENIC
SBS Chr5 15398121 G-A Hetero INTERGENIC
SBS Chr5 29068307 C-T Hetero INTRON
SBS Chr6 7962025 G-C Hetero INTERGENIC
SBS Chr6 11669446 A-G Hetero INTRON
SBS Chr7 5648082 A-G Homo INTERGENIC
SBS Chr7 10575258 C-T Hetero INTERGENIC
SBS Chr7 18290345 C-T Hetero INTERGENIC
SBS Chr8 11532455 G-A Hetero INTERGENIC
SBS Chr9 2998281 C-A Hetero UTR_5_PRIME
SBS Chr9 5300001 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g030300
SBS Chr9 9283009 T-C Hetero INTERGENIC
SBS Chr9 10017555 G-A Hetero INTERGENIC
SBS Chr9 10078400 G-A Hetero INTRON
SBS Chr9 10078401 T-A Hetero INTRON
SBS Chr9 14353624 T-A Hetero INTERGENIC
SBS Chr9 19604584 A-G Hetero INTERGENIC
SBS Chr9 19932384 G-A Hetero INTERGENIC
SBS Chr10 12244751 C-T Hetero INTERGENIC
SBS Chr11 14538969 G-A Homo INTRON
SBS Chr11 16756510 G-A Hetero INTERGENIC
SBS Chr12 1916848 C-T Homo INTERGENIC
SBS Chr12 18388497 C-T Homo INTERGENIC
SBS Chr12 23329661 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3498168 3498182 14
Deletion Chr8 4811295 4811305 10
Deletion Chr5 4909674 4909675 1
Deletion Chr2 14486117 14486118 1
Deletion Chr11 15121951 15121955 4
Deletion Chr1 17561752 17561753 1
Deletion Chr1 20759413 20759418 5
Deletion Chr7 21244624 21244631 7
Deletion Chr11 23372932 23372957 25
Deletion Chr11 23547001 23596000 48999 3
Deletion Chr11 24139599 24139612 13
Deletion Chr4 26867978 26867980 2 OsKitaake04g194600
Deletion Chr5 27905669 27905670 1
Deletion Chr4 34067001 34106000 38999 OsKitaake04g284900
Deletion Chr4 34298001 34355000 56999 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 8143087 8143090 2
Insertion Chr3 23180574 23180577 2
Insertion Chr6 26228257 26228261 3
Insertion Chr7 297770 297773 2
Insertion Chr8 6081434 6081438 3
Insertion Chr8 28456327 28456330 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 3660740 3715281 OsKitaake06g051000
Inversion Chr6 3660746 3772716 OsKitaake06g051000
Inversion Chr4 33666135 34522971 OsKitaake04g279100
Inversion Chr4 33666154 34522985 OsKitaake04g279100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 22757207 Chr4 34354486
Translocation Chr11 23547534 Chr6 2074572

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9917692	T-C	Hetero	INTERGENIC
SBS	Chr1	11018938	G-T	Hetero	INTERGENIC
SBS	Chr1	30922420	C-A	Hetero	INTERGENIC
SBS	Chr3	13353634	G-A	Homo	INTRON
SBS	Chr3	21107251	T-C	Hetero	INTERGENIC
SBS	Chr3	23359870	C-T	Hetero	INTERGENIC
SBS	Chr4	21840940	A-C	Homo	INTRON
SBS	Chr5	5039161	T-A	Hetero	INTERGENIC
SBS	Chr5	15398121	G-A	Hetero	INTERGENIC
SBS	Chr5	29068307	C-T	Hetero	INTRON
SBS	Chr6	7962025	G-C	Hetero	INTERGENIC
SBS	Chr6	11669446	A-G	Hetero	INTRON
SBS	Chr7	5648082	A-G	Homo	INTERGENIC
SBS	Chr7	10575258	C-T	Hetero	INTERGENIC
SBS	Chr7	18290345	C-T	Hetero	INTERGENIC
SBS	Chr8	11532455	G-A	Hetero	INTERGENIC
SBS	Chr9	2998281	C-A	Hetero	UTR_5_PRIME
SBS	Chr9	5300001	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g030300
SBS	Chr9	9283009	T-C	Hetero	INTERGENIC
SBS	Chr9	10017555	G-A	Hetero	INTERGENIC
SBS	Chr9	10078400	G-A	Hetero	INTRON
SBS	Chr9	10078401	T-A	Hetero	INTRON
SBS	Chr9	14353624	T-A	Hetero	INTERGENIC
SBS	Chr9	19604584	A-G	Hetero	INTERGENIC
SBS	Chr9	19932384	G-A	Hetero	INTERGENIC
SBS	Chr10	12244751	C-T	Hetero	INTERGENIC
SBS	Chr11	14538969	G-A	Homo	INTRON
SBS	Chr11	16756510	G-A	Hetero	INTERGENIC
SBS	Chr12	1916848	C-T	Homo	INTERGENIC
SBS	Chr12	18388497	C-T	Homo	INTERGENIC
SBS	Chr12	23329661	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3498168	3498182	14
Deletion	Chr8	4811295	4811305	10
Deletion	Chr5	4909674	4909675	1
Deletion	Chr2	14486117	14486118	1
Deletion	Chr11	15121951	15121955	4
Deletion	Chr1	17561752	17561753	1
Deletion	Chr1	20759413	20759418	5
Deletion	Chr7	21244624	21244631	7
Deletion	Chr11	23372932	23372957	25
Deletion	Chr11	23547001	23596000	48999	3
Deletion	Chr11	24139599	24139612	13
Deletion	Chr4	26867978	26867980	2	OsKitaake04g194600
Deletion	Chr5	27905669	27905670	1
Deletion	Chr4	34067001	34106000	38999	OsKitaake04g284900
Deletion	Chr4	34298001	34355000	56999	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3660740	3715281	OsKitaake06g051000
Inversion	Chr6	3660746	3772716	OsKitaake06g051000
Inversion	Chr4	33666135	34522971	OsKitaake04g279100
Inversion	Chr4	33666154	34522985	OsKitaake04g279100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes