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Mutant Information

Mutant Name	FN2458 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2458 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2798461 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g035300
SBS Chr1 21980311 G-A Homo INTERGENIC
SBS Chr1 24964450 A-T Hetero INTERGENIC
SBS Chr1 28463841 A-G Hetero INTERGENIC
SBS Chr2 10270367 G-A Homo INTERGENIC
SBS Chr2 10338568 T-A Homo NON_SYNONYMOUS_CODING OsKitaake02g123300
SBS Chr2 30379735 C-T Hetero UTR_3_PRIME
SBS Chr2 34681488 T-A Hetero INTERGENIC
SBS Chr2 36729573 T-A Hetero INTRON
SBS Chr2 37131685 A-G Hetero INTERGENIC
SBS Chr3 1766012 T-C Hetero INTRON
SBS Chr3 2587956 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 17218060 G-A Hetero INTERGENIC
SBS Chr4 7777094 T-C Hetero INTERGENIC
SBS Chr4 11432500 C-T Hetero INTERGENIC
SBS Chr4 24886245 G-A Hetero INTERGENIC
SBS Chr4 34227489 C-T Hetero INTERGENIC
SBS Chr5 5911443 C-T Hetero INTERGENIC
SBS Chr6 8876223 A-C Homo INTERGENIC
SBS Chr6 9885634 G-A Homo INTERGENIC
SBS Chr6 15597874 G-T Homo INTERGENIC
SBS Chr6 15597877 G-A Homo INTERGENIC
SBS Chr6 26544653 C-T Hetero INTERGENIC
SBS Chr6 28886851 G-A Hetero INTERGENIC
SBS Chr7 7319027 G-A Hetero INTERGENIC
SBS Chr7 8978763 C-T Hetero INTERGENIC
SBS Chr7 13069005 C-T Hetero INTERGENIC
SBS Chr7 25137145 C-G Homo INTERGENIC
SBS Chr8 15416658 C-T Hetero INTERGENIC
SBS Chr8 15418853 C-A Hetero INTERGENIC
SBS Chr8 20416358 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g151150
SBS Chr8 22472622 G-A Hetero INTERGENIC
SBS Chr8 24590349 G-A Homo INTERGENIC
SBS Chr8 26783741 C-A Homo INTERGENIC
SBS Chr9 18766830 G-T Hetero INTERGENIC
SBS Chr9 19701766 A-G Hetero INTERGENIC
SBS Chr9 21686252 T-G Hetero INTRON
SBS Chr10 20334298 C-T Hetero INTERGENIC
SBS Chr11 10937791 A-T Hetero INTERGENIC
SBS Chr11 24196622 G-C Hetero INTERGENIC
SBS Chr12 6674581 A-G Hetero INTERGENIC
SBS Chr12 12688505 T-C Hetero INTERGENIC
SBS Chr12 20532240 C-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 3184163 3184169 6 OsKitaake02g045700
Deletion Chr1 3551069 3551081 12
Deletion Chr1 5535497 5535500 3 OsKitaake01g071300
Deletion Chr10 7509929 7509931 2
Deletion Chr4 7774749 7774751 2
Deletion Chr2 9563874 9563879 5
Deletion Chr1 10783370 10783374 4
Deletion Chr10 11741541 11741544 3
Deletion Chr12 13123973 13123974 1
Deletion Chr8 17467001 17607000 139999 9
Deletion Chr6 22062019 22062049 30
Deletion Chr12 22549885 22549886 1 OsKitaake12g177000
Deletion Chr5 28692553 28692555 2
Deletion Chr7 28961927 28961928 1
Deletion Chr11 29012001 29091000 78999 9
Deletion Chr4 31628196 31628200 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25537567 25537570 2
Insertion Chr4 30058244 30058248 3
Insertion Chr9 15233948 15233951 2
Insertion Chr5 9695636 9695638 1 OsKitaake05g088800

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 14297712 14634107 OsKitaake07g123350
Inversion Chr7 14297723 14634115 OsKitaake07g123350

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 734355 Chr1 6382687 2
Translocation Chr3 734363 Chr1 6381970 2
Translocation Chr12 792763 Chr11 635408

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2798461	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g035300
SBS	Chr1	21980311	G-A	Homo	INTERGENIC
SBS	Chr1	24964450	A-T	Hetero	INTERGENIC
SBS	Chr1	28463841	A-G	Hetero	INTERGENIC
SBS	Chr2	10270367	G-A	Homo	INTERGENIC
SBS	Chr2	10338568	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g123300
SBS	Chr2	30379735	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	34681488	T-A	Hetero	INTERGENIC
SBS	Chr2	36729573	T-A	Hetero	INTRON
SBS	Chr2	37131685	A-G	Hetero	INTERGENIC
SBS	Chr3	1766012	T-C	Hetero	INTRON
SBS	Chr3	2587956	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	17218060	G-A	Hetero	INTERGENIC
SBS	Chr4	7777094	T-C	Hetero	INTERGENIC
SBS	Chr4	11432500	C-T	Hetero	INTERGENIC
SBS	Chr4	24886245	G-A	Hetero	INTERGENIC
SBS	Chr4	34227489	C-T	Hetero	INTERGENIC
SBS	Chr5	5911443	C-T	Hetero	INTERGENIC
SBS	Chr6	8876223	A-C	Homo	INTERGENIC
SBS	Chr6	9885634	G-A	Homo	INTERGENIC
SBS	Chr6	15597874	G-T	Homo	INTERGENIC
SBS	Chr6	15597877	G-A	Homo	INTERGENIC
SBS	Chr6	26544653	C-T	Hetero	INTERGENIC
SBS	Chr6	28886851	G-A	Hetero	INTERGENIC
SBS	Chr7	7319027	G-A	Hetero	INTERGENIC
SBS	Chr7	8978763	C-T	Hetero	INTERGENIC
SBS	Chr7	13069005	C-T	Hetero	INTERGENIC
SBS	Chr7	25137145	C-G	Homo	INTERGENIC
SBS	Chr8	15416658	C-T	Hetero	INTERGENIC
SBS	Chr8	15418853	C-A	Hetero	INTERGENIC
SBS	Chr8	20416358	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g151150
SBS	Chr8	22472622	G-A	Hetero	INTERGENIC
SBS	Chr8	24590349	G-A	Homo	INTERGENIC
SBS	Chr8	26783741	C-A	Homo	INTERGENIC
SBS	Chr9	18766830	G-T	Hetero	INTERGENIC
SBS	Chr9	19701766	A-G	Hetero	INTERGENIC
SBS	Chr9	21686252	T-G	Hetero	INTRON
SBS	Chr10	20334298	C-T	Hetero	INTERGENIC
SBS	Chr11	10937791	A-T	Hetero	INTERGENIC
SBS	Chr11	24196622	G-C	Hetero	INTERGENIC
SBS	Chr12	6674581	A-G	Hetero	INTERGENIC
SBS	Chr12	12688505	T-C	Hetero	INTERGENIC
SBS	Chr12	20532240	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	3184163	3184169	6	OsKitaake02g045700
Deletion	Chr1	3551069	3551081	12
Deletion	Chr1	5535497	5535500	3	OsKitaake01g071300
Deletion	Chr10	7509929	7509931	2
Deletion	Chr4	7774749	7774751	2
Deletion	Chr2	9563874	9563879	5
Deletion	Chr1	10783370	10783374	4
Deletion	Chr10	11741541	11741544	3
Deletion	Chr12	13123973	13123974	1
Deletion	Chr8	17467001	17607000	139999	9
Deletion	Chr6	22062019	22062049	30
Deletion	Chr12	22549885	22549886	1	OsKitaake12g177000
Deletion	Chr5	28692553	28692555	2
Deletion	Chr7	28961927	28961928	1
Deletion	Chr11	29012001	29091000	78999	9
Deletion	Chr4	31628196	31628200	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14297712	14634107	OsKitaake07g123350
Inversion	Chr7	14297723	14634115	OsKitaake07g123350

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes