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| Mutant Information |
|---|
| Mutant Name | FN2459 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2459 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 3913822 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 10066505 | T-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 27213943 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 8913973 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 8913974 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17582725 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 27965772 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 8848406 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 22361863 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 26034353 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 7875212 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr6 | 25218093 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 25868761 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 26524776 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7765173 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 27451519 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 380390 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 18458050 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 18458053 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 18458057 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 12370017 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 15726850 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 4713363 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 18018481 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 19787258 | C-T | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 3140119 | 3140133 | 14 | |
| Deletion | Chr11 | 4207407 | 4207414 | 7 | |
| Deletion | Chr1 | 5633114 | 5633117 | 3 | |
| Deletion | Chr10 | 5976894 | 5976895 | 1 | |
| Deletion | Chr11 | 12011508 | 12011510 | 2 | |
| Deletion | Chr11 | 12487231 | 12487240 | 9 | |
| Deletion | Chr11 | 13627337 | 13627339 | 2 | |
| Deletion | Chr5 | 17181878 | 17181880 | 2 | |
| Deletion | Chr8 | 18429655 | 18429659 | 4 | |
| Deletion | Chr12 | 21291394 | 21291396 | 2 | |
| Deletion | Chr3 | 26635478 | 26635486 | 8 | |
| Deletion | Chr5 | 26691787 | 26691788 | 1 | |
| Deletion | Chr5 | 29129332 | 29129341 | 9 | OsKitaake05g275800 |
| Deletion | Chr11 | 29613001 | 29739000 | 125999 | 15 |
| Deletion | Chr2 | 36086732 | 36086733 | 1 | |
| Deletion | Chr1 | 43484860 | 43484863 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 3512595 | 3512598 | 2 | |
| Insertion | Chr7 | 20999508 | 20999511 | 2 | |
| Insertion | Chr10 | 20984312 | 20984315 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 1218547 | 1682128 | |
| Inversion | Chr8 | 1218550 | 1682138 | |
| Inversion | Chr3 | 23617595 | 23711193 | OsKitaake03g253600 |
| Inversion | Chr3 | 23617624 | 23711202 | OsKitaake03g253600 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 9844048 | Chr4 | 19653656 | |
| Translocation | Chr11 | 9845141 | Chr4 | 19653656 | |
| Translocation | Chr12 | 26952589 | Chr11 | 29611827 | 2 |