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Mutant Information

Mutant Name	FN2460 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2460 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7648003 T-C Homo INTRON
SBS Chr2 30368244 G-A Hetero INTERGENIC
SBS Chr2 30604503 T-A Hetero INTERGENIC
SBS Chr2 32706242 C-T Hetero INTERGENIC
SBS Chr2 34159409 A-T Hetero INTERGENIC
SBS Chr3 10436498 T-A Homo INTERGENIC
SBS Chr3 17913554 G-A Hetero INTERGENIC
SBS Chr3 23140115 G-T Hetero INTERGENIC
SBS Chr4 3476780 C-T Homo INTERGENIC
SBS Chr5 4695851 C-T Homo INTERGENIC
SBS Chr5 13235585 G-A Hetero INTERGENIC
SBS Chr5 14655149 G-A Hetero INTERGENIC
SBS Chr5 15940544 A-G Hetero INTERGENIC
SBS Chr5 17505941 G-A Hetero INTERGENIC
SBS Chr5 29559681 C-T Homo SYNONYMOUS_CODING
SBS Chr6 4565554 G-A Homo INTERGENIC
SBS Chr6 23627126 A-T Hetero INTRON
SBS Chr7 3850244 C-T Hetero STOP_GAINED OsKitaake07g049400
SBS Chr7 16689419 T-C Homo INTERGENIC
SBS Chr7 28579528 C-T Homo INTERGENIC
SBS Chr7 28790402 G-A Hetero INTERGENIC
SBS Chr8 2689297 C-T Hetero INTERGENIC
SBS Chr8 17636154 T-C Homo INTERGENIC
SBS Chr8 18969110 G-C Homo INTERGENIC
SBS Chr8 21182115 G-T Hetero INTERGENIC
SBS Chr9 7929108 G-A Hetero INTERGENIC
SBS Chr10 14700112 T-C Hetero INTERGENIC
SBS Chr11 8204662 G-A Hetero INTERGENIC
SBS Chr11 12330703 C-T Hetero INTERGENIC
SBS Chr11 16698255 C-T Hetero INTERGENIC
SBS Chr12 539707 G-T Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 724393 724400 7
Deletion Chr7 2881237 2881239 2
Deletion Chr12 8651960 8651970 10
Deletion Chr12 8679785 8679792 7
Deletion Chr3 10028547 10028548 1
Deletion Chr7 10050626 10050640 14
Deletion Chr3 10716042 10716044 2
Deletion Chr9 13048252 13048253 1
Deletion Chr8 13625572 13625574 2
Deletion Chr1 17249110 17249265 155
Deletion Chr3 19830488 19830498 10
Deletion Chr4 21647001 21675000 27999 4
Deletion Chr7 25241137 25241141 4
Deletion Chr1 26033127 26033142 15

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 6770631 6770635 3
Insertion Chr10 21334827 21334830 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 15125353 15216350 OsKitaake02g158500
Inversion Chr2 15125358 15216363 OsKitaake02g158500

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 11831454 Chr4 2796480
Translocation Chr10 13034874 Chr1 29158892 OsKitaake10g079200
Translocation Chr10 13035076 Chr1 41622390 OsKitaake10g079200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7648003	T-C	Homo	INTRON
SBS	Chr2	30368244	G-A	Hetero	INTERGENIC
SBS	Chr2	30604503	T-A	Hetero	INTERGENIC
SBS	Chr2	32706242	C-T	Hetero	INTERGENIC
SBS	Chr2	34159409	A-T	Hetero	INTERGENIC
SBS	Chr3	10436498	T-A	Homo	INTERGENIC
SBS	Chr3	17913554	G-A	Hetero	INTERGENIC
SBS	Chr3	23140115	G-T	Hetero	INTERGENIC
SBS	Chr4	3476780	C-T	Homo	INTERGENIC
SBS	Chr5	4695851	C-T	Homo	INTERGENIC
SBS	Chr5	13235585	G-A	Hetero	INTERGENIC
SBS	Chr5	14655149	G-A	Hetero	INTERGENIC
SBS	Chr5	15940544	A-G	Hetero	INTERGENIC
SBS	Chr5	17505941	G-A	Hetero	INTERGENIC
SBS	Chr5	29559681	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	4565554	G-A	Homo	INTERGENIC
SBS	Chr6	23627126	A-T	Hetero	INTRON
SBS	Chr7	3850244	C-T	Hetero	STOP_GAINED	OsKitaake07g049400
SBS	Chr7	16689419	T-C	Homo	INTERGENIC
SBS	Chr7	28579528	C-T	Homo	INTERGENIC
SBS	Chr7	28790402	G-A	Hetero	INTERGENIC
SBS	Chr8	2689297	C-T	Hetero	INTERGENIC
SBS	Chr8	17636154	T-C	Homo	INTERGENIC
SBS	Chr8	18969110	G-C	Homo	INTERGENIC
SBS	Chr8	21182115	G-T	Hetero	INTERGENIC
SBS	Chr9	7929108	G-A	Hetero	INTERGENIC
SBS	Chr10	14700112	T-C	Hetero	INTERGENIC
SBS	Chr11	8204662	G-A	Hetero	INTERGENIC
SBS	Chr11	12330703	C-T	Hetero	INTERGENIC
SBS	Chr11	16698255	C-T	Hetero	INTERGENIC
SBS	Chr12	539707	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	724393	724400	7
Deletion	Chr7	2881237	2881239	2
Deletion	Chr12	8651960	8651970	10
Deletion	Chr12	8679785	8679792	7
Deletion	Chr3	10028547	10028548	1
Deletion	Chr7	10050626	10050640	14
Deletion	Chr3	10716042	10716044	2
Deletion	Chr9	13048252	13048253	1
Deletion	Chr8	13625572	13625574	2
Deletion	Chr1	17249110	17249265	155
Deletion	Chr3	19830488	19830498	10
Deletion	Chr4	21647001	21675000	27999	4
Deletion	Chr7	25241137	25241141	4
Deletion	Chr1	26033127	26033142	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	15125353	15216350	OsKitaake02g158500
Inversion	Chr2	15125358	15216363	OsKitaake02g158500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes