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Mutant Information

Mutant Name	FN2461 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2461 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 55

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25835667 G-A Hetero INTERGENIC
SBS Chr1 27528565 C-T Hetero INTERGENIC
SBS Chr1 29765450 C-T Hetero INTERGENIC
SBS Chr1 31468844 A-T Hetero INTERGENIC
SBS Chr1 39625644 C-T Hetero INTERGENIC
SBS Chr1 41351009 C-T Hetero INTERGENIC
SBS Chr2 8940922 G-T Hetero INTERGENIC
SBS Chr2 33125245 C-A Hetero UTR_3_PRIME
SBS Chr2 35195257 T-C Hetero INTERGENIC
SBS Chr3 1392068 T-A Hetero INTRON
SBS Chr3 15507882 C-A Hetero INTRON
SBS Chr3 16010583 T-C Hetero INTERGENIC
SBS Chr3 19105757 G-C Homo INTERGENIC
SBS Chr3 24836662 A-G Hetero INTERGENIC
SBS Chr4 2300438 G-A Hetero INTERGENIC
SBS Chr4 27931163 C-A Hetero INTERGENIC
SBS Chr5 3368007 G-A Hetero INTERGENIC
SBS Chr5 6719796 C-T Hetero INTERGENIC
SBS Chr5 8575976 G-T Homo INTERGENIC
SBS Chr5 24921346 G-A Hetero INTERGENIC
SBS Chr5 27554901 C-T Hetero INTERGENIC
SBS Chr5 27813557 T-C Hetero INTERGENIC
SBS Chr6 5545584 A-T Homo UTR_3_PRIME
SBS Chr6 14552658 T-C Hetero INTERGENIC
SBS Chr6 15441924 T-C Homo INTERGENIC
SBS Chr6 27727938 G-A Hetero UTR_5_PRIME
SBS Chr7 5908845 A-T Hetero UTR_5_PRIME
SBS Chr7 12230963 T-A Homo INTERGENIC
SBS Chr7 16597588 C-T Hetero INTERGENIC
SBS Chr7 22687205 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 615108 A-T Homo INTERGENIC
SBS Chr8 5801465 A-T Homo INTERGENIC
SBS Chr8 7538052 C-A Hetero INTERGENIC
SBS Chr8 12380027 A-T Hetero INTERGENIC
SBS Chr8 14232599 G-A Hetero INTERGENIC
SBS Chr8 17126672 C-T Hetero INTERGENIC
SBS Chr8 19471468 A-G Hetero INTERGENIC
SBS Chr8 24697845 C-G Homo INTERGENIC
SBS Chr9 5804679 G-A Hetero INTERGENIC
SBS Chr9 11689793 G-T Hetero INTERGENIC
SBS Chr9 19573336 T-A Hetero INTERGENIC
SBS Chr10 6564558 G-A Homo INTERGENIC
SBS Chr10 9636308 C-T Homo INTERGENIC
SBS Chr10 21629202 C-A Hetero INTERGENIC
SBS Chr11 3117997 C-T Hetero INTERGENIC
SBS Chr11 8335145 C-A Homo INTERGENIC
SBS Chr11 19017740 G-T Homo INTERGENIC
SBS Chr11 20566127 G-T Homo INTERGENIC
SBS Chr11 20567963 A-G Homo INTERGENIC
SBS Chr11 25385350 T-C Homo INTERGENIC
SBS Chr12 2346515 C-A Hetero INTERGENIC
SBS Chr12 8075811 G-A Hetero INTERGENIC
SBS Chr12 15269048 G-A Homo INTERGENIC
SBS Chr12 21254637 C-T Hetero INTERGENIC
SBS Chr12 22750272 T-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1607604 1607606 2
Deletion Chr12 2111232 2111233 1
Deletion Chr4 2611432 2611437 5
Deletion Chr11 2730042 2730044 2 OsKitaake11g038701
Deletion Chr10 6159908 6159922 14
Deletion Chr7 6172190 6172196 6
Deletion Chr1 6362916 6362921 5
Deletion Chr8 6680996 6680998 2
Deletion Chr7 8212902 8212904 2
Deletion Chr7 11181672 11181677 5
Deletion Chr4 14237152 14237155 3
Deletion Chr8 21907352 21907358 6
Deletion Chr6 24356362 24356363 1
Deletion Chr2 25496555 25496565 10 OsKitaake02g251700
Deletion Chr2 34410752 34410753 1
Deletion Chr4 35318586 35318589 3 OsKitaake04g298300

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 12958222 12958225 2
Insertion Chr3 9595849 9595852 2
Insertion Chr12 10596599 10596602 2
Insertion Chr12 19828679 19828682 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 28690373 28972552 OsKitaake11g237000
Inversion Chr11 28693283 28972543 OsKitaake11g237000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25835667	G-A	Hetero	INTERGENIC
SBS	Chr1	27528565	C-T	Hetero	INTERGENIC
SBS	Chr1	29765450	C-T	Hetero	INTERGENIC
SBS	Chr1	31468844	A-T	Hetero	INTERGENIC
SBS	Chr1	39625644	C-T	Hetero	INTERGENIC
SBS	Chr1	41351009	C-T	Hetero	INTERGENIC
SBS	Chr2	8940922	G-T	Hetero	INTERGENIC
SBS	Chr2	33125245	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	35195257	T-C	Hetero	INTERGENIC
SBS	Chr3	1392068	T-A	Hetero	INTRON
SBS	Chr3	15507882	C-A	Hetero	INTRON
SBS	Chr3	16010583	T-C	Hetero	INTERGENIC
SBS	Chr3	19105757	G-C	Homo	INTERGENIC
SBS	Chr3	24836662	A-G	Hetero	INTERGENIC
SBS	Chr4	2300438	G-A	Hetero	INTERGENIC
SBS	Chr4	27931163	C-A	Hetero	INTERGENIC
SBS	Chr5	3368007	G-A	Hetero	INTERGENIC
SBS	Chr5	6719796	C-T	Hetero	INTERGENIC
SBS	Chr5	8575976	G-T	Homo	INTERGENIC
SBS	Chr5	24921346	G-A	Hetero	INTERGENIC
SBS	Chr5	27554901	C-T	Hetero	INTERGENIC
SBS	Chr5	27813557	T-C	Hetero	INTERGENIC
SBS	Chr6	5545584	A-T	Homo	UTR_3_PRIME
SBS	Chr6	14552658	T-C	Hetero	INTERGENIC
SBS	Chr6	15441924	T-C	Homo	INTERGENIC
SBS	Chr6	27727938	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	5908845	A-T	Hetero	UTR_5_PRIME
SBS	Chr7	12230963	T-A	Homo	INTERGENIC
SBS	Chr7	16597588	C-T	Hetero	INTERGENIC
SBS	Chr7	22687205	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	615108	A-T	Homo	INTERGENIC
SBS	Chr8	5801465	A-T	Homo	INTERGENIC
SBS	Chr8	7538052	C-A	Hetero	INTERGENIC
SBS	Chr8	12380027	A-T	Hetero	INTERGENIC
SBS	Chr8	14232599	G-A	Hetero	INTERGENIC
SBS	Chr8	17126672	C-T	Hetero	INTERGENIC
SBS	Chr8	19471468	A-G	Hetero	INTERGENIC
SBS	Chr8	24697845	C-G	Homo	INTERGENIC
SBS	Chr9	5804679	G-A	Hetero	INTERGENIC
SBS	Chr9	11689793	G-T	Hetero	INTERGENIC
SBS	Chr9	19573336	T-A	Hetero	INTERGENIC
SBS	Chr10	6564558	G-A	Homo	INTERGENIC
SBS	Chr10	9636308	C-T	Homo	INTERGENIC
SBS	Chr10	21629202	C-A	Hetero	INTERGENIC
SBS	Chr11	3117997	C-T	Hetero	INTERGENIC
SBS	Chr11	8335145	C-A	Homo	INTERGENIC
SBS	Chr11	19017740	G-T	Homo	INTERGENIC
SBS	Chr11	20566127	G-T	Homo	INTERGENIC
SBS	Chr11	20567963	A-G	Homo	INTERGENIC
SBS	Chr11	25385350	T-C	Homo	INTERGENIC
SBS	Chr12	2346515	C-A	Hetero	INTERGENIC
SBS	Chr12	8075811	G-A	Hetero	INTERGENIC
SBS	Chr12	15269048	G-A	Homo	INTERGENIC
SBS	Chr12	21254637	C-T	Hetero	INTERGENIC
SBS	Chr12	22750272	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1607604	1607606	2
Deletion	Chr12	2111232	2111233	1
Deletion	Chr4	2611432	2611437	5
Deletion	Chr11	2730042	2730044	2	OsKitaake11g038701
Deletion	Chr10	6159908	6159922	14
Deletion	Chr7	6172190	6172196	6
Deletion	Chr1	6362916	6362921	5
Deletion	Chr8	6680996	6680998	2
Deletion	Chr7	8212902	8212904	2
Deletion	Chr7	11181672	11181677	5
Deletion	Chr4	14237152	14237155	3
Deletion	Chr8	21907352	21907358	6
Deletion	Chr6	24356362	24356363	1
Deletion	Chr2	25496555	25496565	10	OsKitaake02g251700
Deletion	Chr2	34410752	34410753	1
Deletion	Chr4	35318586	35318589	3	OsKitaake04g298300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	28690373	28972552	OsKitaake11g237000
Inversion	Chr11	28693283	28972543	OsKitaake11g237000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes