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Mutant Information

Mutant Name	FN2462 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2462 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15352309 C-G Homo INTERGENIC
SBS Chr1 30467692 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g301100
SBS Chr1 33221614 G-A Hetero INTERGENIC
SBS Chr2 1200866 G-T Hetero INTERGENIC
SBS Chr2 7725855 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g101200
SBS Chr2 13767681 C-T Hetero INTERGENIC
SBS Chr2 13983544 C-T Hetero INTERGENIC
SBS Chr2 18507024 C-A Hetero INTERGENIC
SBS Chr2 18880120 C-T Hetero UTR_3_PRIME
SBS Chr2 23651134 G-A Hetero INTERGENIC
SBS Chr2 30535968 C-T Hetero INTERGENIC
SBS Chr2 32201507 C-T Hetero INTERGENIC
SBS Chr3 1847374 C-T Hetero STOP_GAINED OsKitaake03g026300
SBS Chr3 1847375 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g026300
SBS Chr3 2172291 T-G Hetero INTERGENIC
SBS Chr3 24229133 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g258800
SBS Chr3 29966109 A-T Homo INTERGENIC
SBS Chr4 11938006 T-A Homo INTERGENIC
SBS Chr4 14791873 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g070100
SBS Chr4 21469914 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g120400
SBS Chr5 9538187 G-T Hetero INTERGENIC
SBS Chr5 12092314 G-A Homo INTERGENIC
SBS Chr5 12166124 G-T Homo INTERGENIC
SBS Chr5 24894292 C-G Hetero INTERGENIC
SBS Chr5 30065588 G-A Homo INTERGENIC
SBS Chr6 5913020 A-G Hetero INTERGENIC
SBS Chr6 12857531 C-A Hetero SYNONYMOUS_CODING
SBS Chr6 18908922 C-A Hetero INTERGENIC
SBS Chr6 20072695 T-C Hetero INTERGENIC
SBS Chr6 21003471 A-G Hetero INTERGENIC
SBS Chr7 8304379 A-G Hetero INTERGENIC
SBS Chr7 10395063 T-A Hetero INTERGENIC
SBS Chr7 21793348 T-A Hetero INTERGENIC
SBS Chr7 22709193 A-T Hetero START_GAINED
SBS Chr7 23567803 G-A Hetero INTERGENIC
SBS Chr8 4810174 A-G Hetero INTERGENIC
SBS Chr8 6424212 G-T Hetero INTERGENIC
SBS Chr8 8685965 G-A Hetero INTERGENIC
SBS Chr8 16082962 C-G Hetero INTRON
SBS Chr8 25627484 C-A Hetero INTERGENIC
SBS Chr9 14950816 C-G Hetero INTERGENIC
SBS Chr10 2744116 T-A Hetero INTERGENIC
SBS Chr10 10190100 T-A Hetero INTERGENIC
SBS Chr10 14290552 G-T Hetero INTERGENIC
SBS Chr10 14800208 C-T Homo INTERGENIC
SBS Chr10 14800209 A-T Homo INTERGENIC
SBS Chr11 813682 T-C Hetero INTRON
SBS Chr11 10485402 C-A Hetero INTERGENIC
SBS Chr11 15441277 C-T Homo INTERGENIC
SBS Chr11 18007839 A-T Hetero INTRON
SBS Chr11 19006788 C-T Homo INTERGENIC
SBS Chr12 9189364 G-A Hetero INTERGENIC
SBS Chr12 14255299 T-A Hetero INTERGENIC
SBS Chr12 27030814 C-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 774666 774668 2
Deletion Chr5 4883177 4883178 1
Deletion Chr11 9760239 9760252 13
Deletion Chr4 10507868 10507870 2
Deletion Chr9 11878952 11878953 1
Deletion Chr12 11979001 12198000 218999 25
Deletion Chr3 14533663 14533675 12
Deletion Chr4 15329873 15329874 1
Deletion Chr11 16535916 16535919 3
Deletion Chr11 17359469 17359470 1
Deletion Chr11 25347842 25347847 5
Deletion Chr6 27511861 27511868 7
Deletion Chr1 39448620 39448623 3 OsKitaake01g425300
Deletion Chr1 41173007 41173010 3 OsKitaake01g449400
Deletion Chr1 41727782 41727791 9

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 33142928 33142936 7
Insertion Chr7 17400373 17400376 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 1258234 Chr7 19588976 OsKitaake07g159200
Translocation Chr9 1270129 Chr8 2940494 OsKitaake09g007900
Translocation Chr9 1271702 Chr8 2940499 OsKitaake09g007900
Translocation Chr9 15402326 Chr7 23219512

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15352309	C-G	Homo	INTERGENIC
SBS	Chr1	30467692	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g301100
SBS	Chr1	33221614	G-A	Hetero	INTERGENIC
SBS	Chr2	1200866	G-T	Hetero	INTERGENIC
SBS	Chr2	7725855	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g101200
SBS	Chr2	13767681	C-T	Hetero	INTERGENIC
SBS	Chr2	13983544	C-T	Hetero	INTERGENIC
SBS	Chr2	18507024	C-A	Hetero	INTERGENIC
SBS	Chr2	18880120	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	23651134	G-A	Hetero	INTERGENIC
SBS	Chr2	30535968	C-T	Hetero	INTERGENIC
SBS	Chr2	32201507	C-T	Hetero	INTERGENIC
SBS	Chr3	1847374	C-T	Hetero	STOP_GAINED	OsKitaake03g026300
SBS	Chr3	1847375	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g026300
SBS	Chr3	2172291	T-G	Hetero	INTERGENIC
SBS	Chr3	24229133	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g258800
SBS	Chr3	29966109	A-T	Homo	INTERGENIC
SBS	Chr4	11938006	T-A	Homo	INTERGENIC
SBS	Chr4	14791873	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g070100
SBS	Chr4	21469914	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g120400
SBS	Chr5	9538187	G-T	Hetero	INTERGENIC
SBS	Chr5	12092314	G-A	Homo	INTERGENIC
SBS	Chr5	12166124	G-T	Homo	INTERGENIC
SBS	Chr5	24894292	C-G	Hetero	INTERGENIC
SBS	Chr5	30065588	G-A	Homo	INTERGENIC
SBS	Chr6	5913020	A-G	Hetero	INTERGENIC
SBS	Chr6	12857531	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	18908922	C-A	Hetero	INTERGENIC
SBS	Chr6	20072695	T-C	Hetero	INTERGENIC
SBS	Chr6	21003471	A-G	Hetero	INTERGENIC
SBS	Chr7	8304379	A-G	Hetero	INTERGENIC
SBS	Chr7	10395063	T-A	Hetero	INTERGENIC
SBS	Chr7	21793348	T-A	Hetero	INTERGENIC
SBS	Chr7	22709193	A-T	Hetero	START_GAINED
SBS	Chr7	23567803	G-A	Hetero	INTERGENIC
SBS	Chr8	4810174	A-G	Hetero	INTERGENIC
SBS	Chr8	6424212	G-T	Hetero	INTERGENIC
SBS	Chr8	8685965	G-A	Hetero	INTERGENIC
SBS	Chr8	16082962	C-G	Hetero	INTRON
SBS	Chr8	25627484	C-A	Hetero	INTERGENIC
SBS	Chr9	14950816	C-G	Hetero	INTERGENIC
SBS	Chr10	2744116	T-A	Hetero	INTERGENIC
SBS	Chr10	10190100	T-A	Hetero	INTERGENIC
SBS	Chr10	14290552	G-T	Hetero	INTERGENIC
SBS	Chr10	14800208	C-T	Homo	INTERGENIC
SBS	Chr10	14800209	A-T	Homo	INTERGENIC
SBS	Chr11	813682	T-C	Hetero	INTRON
SBS	Chr11	10485402	C-A	Hetero	INTERGENIC
SBS	Chr11	15441277	C-T	Homo	INTERGENIC
SBS	Chr11	18007839	A-T	Hetero	INTRON
SBS	Chr11	19006788	C-T	Homo	INTERGENIC
SBS	Chr12	9189364	G-A	Hetero	INTERGENIC
SBS	Chr12	14255299	T-A	Hetero	INTERGENIC
SBS	Chr12	27030814	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	774666	774668	2
Deletion	Chr5	4883177	4883178	1
Deletion	Chr11	9760239	9760252	13
Deletion	Chr4	10507868	10507870	2
Deletion	Chr9	11878952	11878953	1
Deletion	Chr12	11979001	12198000	218999	25
Deletion	Chr3	14533663	14533675	12
Deletion	Chr4	15329873	15329874	1
Deletion	Chr11	16535916	16535919	3
Deletion	Chr11	17359469	17359470	1
Deletion	Chr11	25347842	25347847	5
Deletion	Chr6	27511861	27511868	7
Deletion	Chr1	39448620	39448623	3	OsKitaake01g425300
Deletion	Chr1	41173007	41173010	3	OsKitaake01g449400
Deletion	Chr1	41727782	41727791	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1258234	Chr7	19588976	OsKitaake07g159200
Translocation	Chr9	1270129	Chr8	2940494	OsKitaake09g007900
Translocation	Chr9	1271702	Chr8	2940499	OsKitaake09g007900
Translocation	Chr9	15402326	Chr7	23219512

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes