Search Kitaake

Mutant Information

Mutant Name	FN2463 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2463 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5966623 T-C Hetero UTR_3_PRIME
SBS Chr1 14545542 A-T Hetero UTR_3_PRIME
SBS Chr1 20424133 G-A Hetero INTERGENIC
SBS Chr1 20862327 C-T Hetero INTERGENIC
SBS Chr2 9282449 C-A Homo INTERGENIC
SBS Chr2 12776604 T-C Homo INTRON
SBS Chr3 16931868 C-T Hetero INTERGENIC
SBS Chr3 25105217 A-G Homo INTERGENIC
SBS Chr3 29023532 G-C Homo INTERGENIC
SBS Chr3 35819325 T-A Hetero INTERGENIC
SBS Chr4 1944670 G-A Homo INTERGENIC
SBS Chr4 10000381 G-A Hetero INTERGENIC
SBS Chr4 18082532 C-A Hetero INTERGENIC
SBS Chr4 35848899 T-A Homo SYNONYMOUS_CODING
SBS Chr4 35848900 C-A Homo NON_SYNONYMOUS_CODING OsKitaake04g307200
SBS Chr5 13170403 T-G Hetero INTERGENIC
SBS Chr5 16192352 C-T Hetero UTR_3_PRIME
SBS Chr6 12482571 T-G Hetero INTERGENIC
SBS Chr7 11040250 T-C Hetero INTERGENIC
SBS Chr7 16309570 A-C Hetero INTERGENIC
SBS Chr7 19426449 T-A Hetero INTRON
SBS Chr7 29635577 T-C Hetero INTERGENIC
SBS Chr8 6504892 C-T Hetero INTERGENIC
SBS Chr8 29076831 G-A Hetero INTERGENIC
SBS Chr10 15432850 C-T Hetero INTERGENIC
SBS Chr10 20249962 T-C Hetero INTERGENIC
SBS Chr10 21087099 C-A Hetero INTRON
SBS Chr10 21179895 G-A Hetero UTR_3_PRIME
SBS Chr11 4328648 G-A Hetero INTERGENIC
SBS Chr11 13648432 T-A Hetero INTERGENIC
SBS Chr11 13648433 T-A Hetero INTERGENIC
SBS Chr11 16630348 G-A Hetero INTERGENIC
SBS Chr12 9014154 G-T Homo INTRON
SBS Chr12 19251716 A-G Hetero SYNONYMOUS_CODING

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2917973 2917979 6 OsKitaake05g033900
Deletion Chr9 7459903 7459905 2
Deletion Chr12 7890369 7890377 8
Deletion Chr11 10772001 11181000 408999 16
Deletion Chr4 11385025 11385026 1
Deletion Chr9 13611238 13611240 2
Deletion Chr12 15698001 15724000 25999
Deletion Chr8 17657251 17657253 2
Deletion Chr10 18499001 18507000 7999 OsKitaake10g131400
Deletion Chr11 20818001 20864000 45999 5
Deletion Chr3 23194326 23194333 7
Deletion Chr12 25328230 25328236 6
Deletion Chr4 26470338 26470340 2
Deletion Chr7 27243461 27243471 10
Deletion Chr1 27818001 27895000 76999 8
Deletion Chr1 28159578 28159584 6
Deletion Chr6 28326001 28375000 48999 4
Deletion Chr6 28566001 28590000 23999 4
Deletion Chr2 28937668 28937677 9

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30505650 30505653 2
Insertion Chr2 3911960 3911965 4
Insertion Chr7 14374084 14374089 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 14767400 14772948
Inversion Chr11 20733725 20819647 OsKitaake11g164400
Inversion Chr1 27819378 27974716 OsKitaake01g271600
Inversion Chr6 28323940 28967126 OsKitaake06g258800

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 9253230 Chr6 28568576 OsKitaake06g262300
Translocation Chr9 9253231 Chr6 28568826 OsKitaake06g262300
Translocation Chr7 26000966 Chr1 27974734 2
Translocation Chr7 26001665 Chr1 27892930 OsKitaake07g238300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5966623	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	14545542	A-T	Hetero	UTR_3_PRIME
SBS	Chr1	20424133	G-A	Hetero	INTERGENIC
SBS	Chr1	20862327	C-T	Hetero	INTERGENIC
SBS	Chr2	9282449	C-A	Homo	INTERGENIC
SBS	Chr2	12776604	T-C	Homo	INTRON
SBS	Chr3	16931868	C-T	Hetero	INTERGENIC
SBS	Chr3	25105217	A-G	Homo	INTERGENIC
SBS	Chr3	29023532	G-C	Homo	INTERGENIC
SBS	Chr3	35819325	T-A	Hetero	INTERGENIC
SBS	Chr4	1944670	G-A	Homo	INTERGENIC
SBS	Chr4	10000381	G-A	Hetero	INTERGENIC
SBS	Chr4	18082532	C-A	Hetero	INTERGENIC
SBS	Chr4	35848899	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr4	35848900	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g307200
SBS	Chr5	13170403	T-G	Hetero	INTERGENIC
SBS	Chr5	16192352	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	12482571	T-G	Hetero	INTERGENIC
SBS	Chr7	11040250	T-C	Hetero	INTERGENIC
SBS	Chr7	16309570	A-C	Hetero	INTERGENIC
SBS	Chr7	19426449	T-A	Hetero	INTRON
SBS	Chr7	29635577	T-C	Hetero	INTERGENIC
SBS	Chr8	6504892	C-T	Hetero	INTERGENIC
SBS	Chr8	29076831	G-A	Hetero	INTERGENIC
SBS	Chr10	15432850	C-T	Hetero	INTERGENIC
SBS	Chr10	20249962	T-C	Hetero	INTERGENIC
SBS	Chr10	21087099	C-A	Hetero	INTRON
SBS	Chr10	21179895	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	4328648	G-A	Hetero	INTERGENIC
SBS	Chr11	13648432	T-A	Hetero	INTERGENIC
SBS	Chr11	13648433	T-A	Hetero	INTERGENIC
SBS	Chr11	16630348	G-A	Hetero	INTERGENIC
SBS	Chr12	9014154	G-T	Homo	INTRON
SBS	Chr12	19251716	A-G	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2917973	2917979	6	OsKitaake05g033900
Deletion	Chr9	7459903	7459905	2
Deletion	Chr12	7890369	7890377	8
Deletion	Chr11	10772001	11181000	408999	16
Deletion	Chr4	11385025	11385026	1
Deletion	Chr9	13611238	13611240	2
Deletion	Chr12	15698001	15724000	25999
Deletion	Chr8	17657251	17657253	2
Deletion	Chr10	18499001	18507000	7999	OsKitaake10g131400
Deletion	Chr11	20818001	20864000	45999	5
Deletion	Chr3	23194326	23194333	7
Deletion	Chr12	25328230	25328236	6
Deletion	Chr4	26470338	26470340	2
Deletion	Chr7	27243461	27243471	10
Deletion	Chr1	27818001	27895000	76999	8
Deletion	Chr1	28159578	28159584	6
Deletion	Chr6	28326001	28375000	48999	4
Deletion	Chr6	28566001	28590000	23999	4
Deletion	Chr2	28937668	28937677	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14767400	14772948
Inversion	Chr11	20733725	20819647	OsKitaake11g164400
Inversion	Chr1	27819378	27974716	OsKitaake01g271600
Inversion	Chr6	28323940	28967126	OsKitaake06g258800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes