Search Kitaake

Mutant Information

Mutant Name	FN2464 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2464 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8556897 A-G Hetero INTERGENIC
SBS Chr1 8556898 G-A Homo INTERGENIC
SBS Chr1 8556899 C-A Homo INTERGENIC
SBS Chr1 13297186 C-T Hetero INTERGENIC
SBS Chr1 28694341 G-A Hetero INTERGENIC
SBS Chr1 29846731 C-A Hetero INTERGENIC
SBS Chr2 6986626 C-T Hetero INTERGENIC
SBS Chr2 13285823 A-G Hetero INTERGENIC
SBS Chr2 22343534 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 22343535 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g216100
SBS Chr3 17246758 T-C Hetero INTERGENIC
SBS Chr3 22801038 A-G Hetero INTERGENIC
SBS Chr4 14718297 C-T Hetero INTERGENIC
SBS Chr4 23423084 C-T Hetero UTR_3_PRIME
SBS Chr5 25338462 C-T Hetero INTERGENIC
SBS Chr6 1486866 G-A Hetero INTERGENIC
SBS Chr6 1486867 G-A Hetero INTERGENIC
SBS Chr6 15435372 C-T Hetero INTERGENIC
SBS Chr6 17659211 G-A Hetero INTRON
SBS Chr6 19355550 G-A Hetero INTRON
SBS Chr6 27752456 A-G Hetero INTERGENIC
SBS Chr7 6353348 C-T Hetero INTERGENIC
SBS Chr7 6420979 A-G Homo INTERGENIC
SBS Chr7 8898195 A-G Homo INTERGENIC
SBS Chr9 9236704 A-T Hetero INTERGENIC
SBS Chr10 10372060 G-A Homo INTERGENIC
SBS Chr11 5397591 C-T Homo INTERGENIC
SBS Chr11 5397600 G-A Homo INTERGENIC
SBS Chr11 12635568 A-C Hetero INTERGENIC
SBS Chr11 14659228 G-A Hetero INTERGENIC
SBS Chr11 16179008 G-T Hetero UTR_3_PRIME
SBS Chr11 21961688 C-A Hetero INTRON
SBS Chr11 26832939 T-A Hetero INTERGENIC
SBS Chr11 27015598 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g219900
SBS Chr12 6460583 G-A Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1921443 1921444 1 OsKitaake01g023200
Deletion Chr12 3110387 3110407 20
Deletion Chr12 5096556 5096559 3
Deletion Chr9 6230278 6230279 1
Deletion Chr11 7601027 7601031 4
Deletion Chr8 12730852 12730859 7
Deletion Chr8 13724446 13724459 13
Deletion Chr8 13865391 13865393 2
Deletion Chr12 14660347 14660349 2
Deletion Chr9 15191242 15191255 13
Deletion Chr3 36960634 36960636 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 27344236 27344241 4
Insertion Chr3 13053394 13053399 4
Insertion Chr3 23801118 23801121 2
Insertion Chr4 12262161 12262164 2
Insertion Chr4 33669529 33669532 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 11567976 11884966
Inversion Chr3 11567990 11884981
Inversion Chr6 17660378 17672338 2
Inversion Chr6 17660391 17672345 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 15810773 Chr1 6205545
Translocation Chr2 15810783 Chr1 6202547

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8556897	A-G	Hetero	INTERGENIC
SBS	Chr1	8556898	G-A	Homo	INTERGENIC
SBS	Chr1	8556899	C-A	Homo	INTERGENIC
SBS	Chr1	13297186	C-T	Hetero	INTERGENIC
SBS	Chr1	28694341	G-A	Hetero	INTERGENIC
SBS	Chr1	29846731	C-A	Hetero	INTERGENIC
SBS	Chr2	6986626	C-T	Hetero	INTERGENIC
SBS	Chr2	13285823	A-G	Hetero	INTERGENIC
SBS	Chr2	22343534	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	22343535	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g216100
SBS	Chr3	17246758	T-C	Hetero	INTERGENIC
SBS	Chr3	22801038	A-G	Hetero	INTERGENIC
SBS	Chr4	14718297	C-T	Hetero	INTERGENIC
SBS	Chr4	23423084	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	25338462	C-T	Hetero	INTERGENIC
SBS	Chr6	1486866	G-A	Hetero	INTERGENIC
SBS	Chr6	1486867	G-A	Hetero	INTERGENIC
SBS	Chr6	15435372	C-T	Hetero	INTERGENIC
SBS	Chr6	17659211	G-A	Hetero	INTRON
SBS	Chr6	19355550	G-A	Hetero	INTRON
SBS	Chr6	27752456	A-G	Hetero	INTERGENIC
SBS	Chr7	6353348	C-T	Hetero	INTERGENIC
SBS	Chr7	6420979	A-G	Homo	INTERGENIC
SBS	Chr7	8898195	A-G	Homo	INTERGENIC
SBS	Chr9	9236704	A-T	Hetero	INTERGENIC
SBS	Chr10	10372060	G-A	Homo	INTERGENIC
SBS	Chr11	5397591	C-T	Homo	INTERGENIC
SBS	Chr11	5397600	G-A	Homo	INTERGENIC
SBS	Chr11	12635568	A-C	Hetero	INTERGENIC
SBS	Chr11	14659228	G-A	Hetero	INTERGENIC
SBS	Chr11	16179008	G-T	Hetero	UTR_3_PRIME
SBS	Chr11	21961688	C-A	Hetero	INTRON
SBS	Chr11	26832939	T-A	Hetero	INTERGENIC
SBS	Chr11	27015598	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g219900
SBS	Chr12	6460583	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1921443	1921444	1	OsKitaake01g023200
Deletion	Chr12	3110387	3110407	20
Deletion	Chr12	5096556	5096559	3
Deletion	Chr9	6230278	6230279	1
Deletion	Chr11	7601027	7601031	4
Deletion	Chr8	12730852	12730859	7
Deletion	Chr8	13724446	13724459	13
Deletion	Chr8	13865391	13865393	2
Deletion	Chr12	14660347	14660349	2
Deletion	Chr9	15191242	15191255	13
Deletion	Chr3	36960634	36960636	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11567976	11884966
Inversion	Chr3	11567990	11884981
Inversion	Chr6	17660378	17672338	2
Inversion	Chr6	17660391	17672345	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes