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Mutant Information

Mutant Name	FN2468 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2468 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12632797 G-T Hetero INTERGENIC
SBS Chr1 14760656 C-A Hetero INTERGENIC
SBS Chr1 29872732 A-G Hetero INTRON
SBS Chr1 30399179 A-G Hetero INTERGENIC
SBS Chr1 43705077 C-T Hetero INTRON
SBS Chr2 1899941 C-T Homo INTERGENIC
SBS Chr2 32761415 C-G Hetero INTERGENIC
SBS Chr3 18445095 C-T Homo INTRON
SBS Chr3 25817992 G-A Homo INTERGENIC
SBS Chr4 273400 C-T Homo INTERGENIC
SBS Chr4 4571412 G-A Homo INTERGENIC
SBS Chr4 18960524 G-A Hetero INTERGENIC
SBS Chr4 26979425 T-C Homo INTERGENIC
SBS Chr4 28183079 A-G Hetero INTERGENIC
SBS Chr4 33067925 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g268300
SBS Chr4 33097053 G-A Hetero INTERGENIC
SBS Chr5 9032813 C-T Hetero INTERGENIC
SBS Chr5 12998099 C-A Hetero INTERGENIC
SBS Chr5 20978647 G-C Hetero INTERGENIC
SBS Chr5 27016181 C-T Hetero INTERGENIC
SBS Chr6 407681 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 14813162 A-G Homo INTERGENIC
SBS Chr7 3443835 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g043900
SBS Chr7 28090896 T-A Hetero INTRON
SBS Chr8 13644717 T-A Hetero INTERGENIC
SBS Chr8 14109404 G-A Hetero INTERGENIC
SBS Chr9 7884695 T-C Hetero INTRON
SBS Chr9 8931555 G-A Hetero INTERGENIC
SBS Chr10 12330025 T-A Homo INTERGENIC
SBS Chr10 20970315 T-C Homo INTRON
SBS Chr11 8895089 C-T Hetero INTERGENIC
SBS Chr11 12290271 T-A Hetero INTERGENIC
SBS Chr11 14038727 A-G Hetero INTERGENIC
SBS Chr11 17997561 G-A Hetero INTERGENIC
SBS Chr12 6490572 G-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1143505 1143507 2
Deletion Chr11 3388422 3388424 2
Deletion Chr1 4017001 4068000 50999 7
Deletion Chr2 4602669 4602676 7
Deletion Chr1 7560604 7560605 1
Deletion Chr10 13274305 13274309 4
Deletion Chr1 15719679 15719686 7
Deletion Chr6 15728231 15728236 5
Deletion Chr6 18500010 18500014 4
Deletion Chr10 21959930 21959932 2
Deletion Chr4 24391839 24391935 96 OsKitaake04g158400

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6328712 6328715 2
Insertion Chr12 26651193 26651196 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 14828337 14849294 OsKitaake06g149850

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10558905 Chr7 25262412 OsKitaake07g228200
Translocation Chr9 10559221 Chr7 25262150 OsKitaake07g228200
Translocation Chr11 16552123 Chr1 4017473 2
Translocation Chr11 16552133 Chr1 4017274 2
Translocation Chr12 23319371 Chr2 32514968

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12632797	G-T	Hetero	INTERGENIC
SBS	Chr1	14760656	C-A	Hetero	INTERGENIC
SBS	Chr1	29872732	A-G	Hetero	INTRON
SBS	Chr1	30399179	A-G	Hetero	INTERGENIC
SBS	Chr1	43705077	C-T	Hetero	INTRON
SBS	Chr2	1899941	C-T	Homo	INTERGENIC
SBS	Chr2	32761415	C-G	Hetero	INTERGENIC
SBS	Chr3	18445095	C-T	Homo	INTRON
SBS	Chr3	25817992	G-A	Homo	INTERGENIC
SBS	Chr4	273400	C-T	Homo	INTERGENIC
SBS	Chr4	4571412	G-A	Homo	INTERGENIC
SBS	Chr4	18960524	G-A	Hetero	INTERGENIC
SBS	Chr4	26979425	T-C	Homo	INTERGENIC
SBS	Chr4	28183079	A-G	Hetero	INTERGENIC
SBS	Chr4	33067925	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g268300
SBS	Chr4	33097053	G-A	Hetero	INTERGENIC
SBS	Chr5	9032813	C-T	Hetero	INTERGENIC
SBS	Chr5	12998099	C-A	Hetero	INTERGENIC
SBS	Chr5	20978647	G-C	Hetero	INTERGENIC
SBS	Chr5	27016181	C-T	Hetero	INTERGENIC
SBS	Chr6	407681	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	14813162	A-G	Homo	INTERGENIC
SBS	Chr7	3443835	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g043900
SBS	Chr7	28090896	T-A	Hetero	INTRON
SBS	Chr8	13644717	T-A	Hetero	INTERGENIC
SBS	Chr8	14109404	G-A	Hetero	INTERGENIC
SBS	Chr9	7884695	T-C	Hetero	INTRON
SBS	Chr9	8931555	G-A	Hetero	INTERGENIC
SBS	Chr10	12330025	T-A	Homo	INTERGENIC
SBS	Chr10	20970315	T-C	Homo	INTRON
SBS	Chr11	8895089	C-T	Hetero	INTERGENIC
SBS	Chr11	12290271	T-A	Hetero	INTERGENIC
SBS	Chr11	14038727	A-G	Hetero	INTERGENIC
SBS	Chr11	17997561	G-A	Hetero	INTERGENIC
SBS	Chr12	6490572	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1143505	1143507	2
Deletion	Chr11	3388422	3388424	2
Deletion	Chr1	4017001	4068000	50999	7
Deletion	Chr2	4602669	4602676	7
Deletion	Chr1	7560604	7560605	1
Deletion	Chr10	13274305	13274309	4
Deletion	Chr1	15719679	15719686	7
Deletion	Chr6	15728231	15728236	5
Deletion	Chr6	18500010	18500014	4
Deletion	Chr10	21959930	21959932	2
Deletion	Chr4	24391839	24391935	96	OsKitaake04g158400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	14828337	14849294	OsKitaake06g149850

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes