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Mutant Information

Mutant Name	FN2494 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2494 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6927653 T-A Hetero INTERGENIC
SBS Chr1 28913964 A-G Hetero INTERGENIC
SBS Chr1 38369242 T-A Hetero INTRON
SBS Chr1 43220760 G-A Hetero INTERGENIC
SBS Chr2 6081199 T-A Hetero INTERGENIC
SBS Chr2 7284566 C-T Hetero INTERGENIC
SBS Chr2 10073363 C-T Hetero INTERGENIC
SBS Chr2 16288779 C-T Hetero INTERGENIC
SBS Chr3 31478652 A-C Hetero INTERGENIC
SBS Chr4 9586370 G-A Hetero INTERGENIC
SBS Chr4 15648277 G-A Hetero INTERGENIC
SBS Chr4 21250399 A-G Hetero INTERGENIC
SBS Chr4 25867834 T-G Hetero INTRON
SBS Chr5 5072517 A-C Hetero INTERGENIC
SBS Chr5 19923277 C-T Hetero INTERGENIC
SBS Chr5 26814729 G-A Homo INTERGENIC
SBS Chr6 6534950 G-A Hetero INTERGENIC
SBS Chr6 16125601 G-A Homo INTERGENIC
SBS Chr6 29659592 C-A Homo INTERGENIC
SBS Chr7 1304513 C-A Hetero INTERGENIC
SBS Chr7 1304515 T-A Hetero INTERGENIC
SBS Chr7 2908237 T-A Hetero INTERGENIC
SBS Chr7 3668864 C-T Hetero INTERGENIC
SBS Chr7 11892729 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g109100
SBS Chr7 11918967 T-G Hetero INTERGENIC
SBS Chr7 24195478 G-A Hetero INTERGENIC
SBS Chr8 8697481 T-C Hetero INTERGENIC
SBS Chr8 13091471 C-T Hetero INTERGENIC
SBS Chr8 13719945 G-C Homo INTERGENIC
SBS Chr8 25756219 A-G Homo INTERGENIC
SBS Chr10 20549812 A-G Hetero INTERGENIC
SBS Chr11 6023049 C-G Hetero INTRON
SBS Chr11 6582009 G-A Hetero INTERGENIC
SBS Chr11 10778212 G-T Hetero INTERGENIC
SBS Chr11 11012676 G-T Hetero INTERGENIC
SBS Chr11 13132855 G-A Hetero INTERGENIC
SBS Chr11 17407666 G-A Hetero INTERGENIC
SBS Chr11 19882841 T-C Hetero INTERGENIC
SBS Chr11 26651541 G-A Homo INTRON
SBS Chr12 1707924 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g025600
SBS Chr12 18045442 T-A Hetero INTERGENIC
SBS Chr12 22950814 C-A Hetero INTRON
SBS Chr12 23951004 T-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1259310 1259316 6
Deletion Chr6 14602625 14602635 10
Deletion Chr6 16210231 16210252 21
Deletion Chr7 20394548 20394550 2
Deletion Chr11 23639130 23639131 1
Deletion Chr7 24181624 24181626 2
Deletion Chr3 24941213 24941215 2
Deletion Chr2 25478356 25478357 1 OsKitaake02g251400
Deletion Chr11 27194195 27194198 3
Deletion Chr4 34489140 34489160 20
Deletion Chr4 34493303 34493314 11
Deletion Chr1 37191544 37191545 1 OsKitaake01g396700

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19211185 19211188 2
Insertion Chr4 21052268 21052271 2
Insertion Chr4 34711299 34711302 2
Insertion Chr7 12758110 12758113 2
Insertion Chr11 5879372 5879375 2
Insertion Chr12 2987441 2987444 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 24255479 Chr1 28913247
Translocation Chr8 24255480 Chr1 28914794

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6927653	T-A	Hetero	INTERGENIC
SBS	Chr1	28913964	A-G	Hetero	INTERGENIC
SBS	Chr1	38369242	T-A	Hetero	INTRON
SBS	Chr1	43220760	G-A	Hetero	INTERGENIC
SBS	Chr2	6081199	T-A	Hetero	INTERGENIC
SBS	Chr2	7284566	C-T	Hetero	INTERGENIC
SBS	Chr2	10073363	C-T	Hetero	INTERGENIC
SBS	Chr2	16288779	C-T	Hetero	INTERGENIC
SBS	Chr3	31478652	A-C	Hetero	INTERGENIC
SBS	Chr4	9586370	G-A	Hetero	INTERGENIC
SBS	Chr4	15648277	G-A	Hetero	INTERGENIC
SBS	Chr4	21250399	A-G	Hetero	INTERGENIC
SBS	Chr4	25867834	T-G	Hetero	INTRON
SBS	Chr5	5072517	A-C	Hetero	INTERGENIC
SBS	Chr5	19923277	C-T	Hetero	INTERGENIC
SBS	Chr5	26814729	G-A	Homo	INTERGENIC
SBS	Chr6	6534950	G-A	Hetero	INTERGENIC
SBS	Chr6	16125601	G-A	Homo	INTERGENIC
SBS	Chr6	29659592	C-A	Homo	INTERGENIC
SBS	Chr7	1304513	C-A	Hetero	INTERGENIC
SBS	Chr7	1304515	T-A	Hetero	INTERGENIC
SBS	Chr7	2908237	T-A	Hetero	INTERGENIC
SBS	Chr7	3668864	C-T	Hetero	INTERGENIC
SBS	Chr7	11892729	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g109100
SBS	Chr7	11918967	T-G	Hetero	INTERGENIC
SBS	Chr7	24195478	G-A	Hetero	INTERGENIC
SBS	Chr8	8697481	T-C	Hetero	INTERGENIC
SBS	Chr8	13091471	C-T	Hetero	INTERGENIC
SBS	Chr8	13719945	G-C	Homo	INTERGENIC
SBS	Chr8	25756219	A-G	Homo	INTERGENIC
SBS	Chr10	20549812	A-G	Hetero	INTERGENIC
SBS	Chr11	6023049	C-G	Hetero	INTRON
SBS	Chr11	6582009	G-A	Hetero	INTERGENIC
SBS	Chr11	10778212	G-T	Hetero	INTERGENIC
SBS	Chr11	11012676	G-T	Hetero	INTERGENIC
SBS	Chr11	13132855	G-A	Hetero	INTERGENIC
SBS	Chr11	17407666	G-A	Hetero	INTERGENIC
SBS	Chr11	19882841	T-C	Hetero	INTERGENIC
SBS	Chr11	26651541	G-A	Homo	INTRON
SBS	Chr12	1707924	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g025600
SBS	Chr12	18045442	T-A	Hetero	INTERGENIC
SBS	Chr12	22950814	C-A	Hetero	INTRON
SBS	Chr12	23951004	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1259310	1259316	6
Deletion	Chr6	14602625	14602635	10
Deletion	Chr6	16210231	16210252	21
Deletion	Chr7	20394548	20394550	2
Deletion	Chr11	23639130	23639131	1
Deletion	Chr7	24181624	24181626	2
Deletion	Chr3	24941213	24941215	2
Deletion	Chr2	25478356	25478357	1	OsKitaake02g251400
Deletion	Chr11	27194195	27194198	3
Deletion	Chr4	34489140	34489160	20
Deletion	Chr4	34493303	34493314	11
Deletion	Chr1	37191544	37191545	1	OsKitaake01g396700

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	24255479	Chr1	28913247
Translocation	Chr8	24255480	Chr1	28914794

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes