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Mutant Information

Mutant Name	FN2542-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2542-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5502376 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g070700
SBS Chr1 13773913 T-A Homo INTRON
SBS Chr1 20884258 C-T Hetero INTERGENIC
SBS Chr1 26321105 A-G Hetero INTERGENIC
SBS Chr1 28749603 G-A Hetero INTERGENIC
SBS Chr1 30849128 T-A Hetero INTERGENIC
SBS Chr1 40946095 A-C Hetero INTERGENIC
SBS Chr2 15971709 C-G Hetero INTRON
SBS Chr2 32704496 G-A Hetero INTERGENIC
SBS Chr3 6323374 C-A Hetero INTERGENIC
SBS Chr3 12160828 A-G Hetero INTERGENIC
SBS Chr3 13114807 A-G Hetero INTRON
SBS Chr3 25444391 A-G Hetero INTERGENIC
SBS Chr3 34522403 A-C Hetero INTERGENIC
SBS Chr3 34718618 C-T Hetero INTERGENIC
SBS Chr4 4825362 G-A Hetero INTERGENIC
SBS Chr4 5575094 C-T Hetero INTERGENIC
SBS Chr4 11926677 C-T Hetero INTERGENIC
SBS Chr4 26967423 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g195900
SBS Chr4 34112896 C-T Hetero INTERGENIC
SBS Chr5 22381177 G-A Hetero INTERGENIC
SBS Chr6 4066648 C-G Hetero INTERGENIC
SBS Chr6 13208069 G-T Hetero INTERGENIC
SBS Chr7 4123745 A-G Hetero INTERGENIC
SBS Chr7 7746411 T-G,A Hetero INTERGENIC
SBS Chr7 8410964 G-A Hetero INTRON
SBS Chr7 8963265 C-T Hetero INTERGENIC
SBS Chr7 10531910 C-G Hetero INTERGENIC
SBS Chr7 13694192 C-T Hetero INTERGENIC
SBS Chr7 20490492 C-A Hetero INTERGENIC
SBS Chr8 4930503 G-T Hetero INTERGENIC
SBS Chr8 17007327 G-A Hetero INTERGENIC
SBS Chr8 17461916 T-C Hetero INTERGENIC
SBS Chr8 22021815 G-A Hetero INTERGENIC
SBS Chr9 5609390 T-C Homo INTERGENIC
SBS Chr9 11018115 A-G Hetero INTRON
SBS Chr9 12661787 G-A Homo INTERGENIC
SBS Chr9 16414186 G-A Hetero INTRON
SBS Chr9 22316910 A-T Homo INTERGENIC
SBS Chr10 343777 T-C Hetero INTERGENIC
SBS Chr10 11116713 G-A Hetero INTERGENIC
SBS Chr10 11246450 C-T Hetero INTERGENIC
SBS Chr10 11246451 A-T Hetero INTERGENIC
SBS Chr10 12755478 T-C Hetero INTRON
SBS Chr11 12821386 G-A Hetero INTERGENIC
SBS Chr11 14547969 T-C Hetero INTRON
SBS Chr11 16391316 C-A Hetero INTERGENIC
SBS Chr11 24452617 G-A Hetero INTERGENIC
SBS Chr11 28354753 G-A Hetero INTERGENIC
SBS Chr12 827087 G-A Hetero INTERGENIC
SBS Chr12 14945631 C-T Hetero INTERGENIC
SBS Chr12 18310834 G-T Hetero INTERGENIC
SBS Chr12 18413780 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g134300
SBS Chr12 19479456 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 835001 864000 28999 OsKitaake08g011800
Deletion Chr7 2164474 2164478 4
Deletion Chr2 2285317 2285318 1
Deletion Chr2 2887835 2887842 7
Deletion Chr12 2904231 2904232 1
Deletion Chr1 9828727 9828732 5
Deletion Chr4 11480632 11480633 1
Deletion Chr4 13873693 13873697 4
Deletion Chr9 18702116 18702121 5
Deletion Chr2 23710204 23710205 1
Deletion Chr4 24602278 24602300 22
Deletion Chr7 28475010 28475011 1
Deletion Chr4 30111372 30111376 4
Deletion Chr2 31271013 31271022 9
Deletion Chr1 43052689 43052691 2 OsKitaake01g475000

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13382846 13382849 2
Insertion Chr9 16308367 16308370 2
Insertion Chr12 18853214 18853219 4
Insertion Chr2 14390888 14390890 1 OsKitaake02g155775

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5502376	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g070700
SBS	Chr1	13773913	T-A	Homo	INTRON
SBS	Chr1	20884258	C-T	Hetero	INTERGENIC
SBS	Chr1	26321105	A-G	Hetero	INTERGENIC
SBS	Chr1	28749603	G-A	Hetero	INTERGENIC
SBS	Chr1	30849128	T-A	Hetero	INTERGENIC
SBS	Chr1	40946095	A-C	Hetero	INTERGENIC
SBS	Chr2	15971709	C-G	Hetero	INTRON
SBS	Chr2	32704496	G-A	Hetero	INTERGENIC
SBS	Chr3	6323374	C-A	Hetero	INTERGENIC
SBS	Chr3	12160828	A-G	Hetero	INTERGENIC
SBS	Chr3	13114807	A-G	Hetero	INTRON
SBS	Chr3	25444391	A-G	Hetero	INTERGENIC
SBS	Chr3	34522403	A-C	Hetero	INTERGENIC
SBS	Chr3	34718618	C-T	Hetero	INTERGENIC
SBS	Chr4	4825362	G-A	Hetero	INTERGENIC
SBS	Chr4	5575094	C-T	Hetero	INTERGENIC
SBS	Chr4	11926677	C-T	Hetero	INTERGENIC
SBS	Chr4	26967423	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g195900
SBS	Chr4	34112896	C-T	Hetero	INTERGENIC
SBS	Chr5	22381177	G-A	Hetero	INTERGENIC
SBS	Chr6	4066648	C-G	Hetero	INTERGENIC
SBS	Chr6	13208069	G-T	Hetero	INTERGENIC
SBS	Chr7	4123745	A-G	Hetero	INTERGENIC
SBS	Chr7	7746411	T-G,A	Hetero	INTERGENIC
SBS	Chr7	8410964	G-A	Hetero	INTRON
SBS	Chr7	8963265	C-T	Hetero	INTERGENIC
SBS	Chr7	10531910	C-G	Hetero	INTERGENIC
SBS	Chr7	13694192	C-T	Hetero	INTERGENIC
SBS	Chr7	20490492	C-A	Hetero	INTERGENIC
SBS	Chr8	4930503	G-T	Hetero	INTERGENIC
SBS	Chr8	17007327	G-A	Hetero	INTERGENIC
SBS	Chr8	17461916	T-C	Hetero	INTERGENIC
SBS	Chr8	22021815	G-A	Hetero	INTERGENIC
SBS	Chr9	5609390	T-C	Homo	INTERGENIC
SBS	Chr9	11018115	A-G	Hetero	INTRON
SBS	Chr9	12661787	G-A	Homo	INTERGENIC
SBS	Chr9	16414186	G-A	Hetero	INTRON
SBS	Chr9	22316910	A-T	Homo	INTERGENIC
SBS	Chr10	343777	T-C	Hetero	INTERGENIC
SBS	Chr10	11116713	G-A	Hetero	INTERGENIC
SBS	Chr10	11246450	C-T	Hetero	INTERGENIC
SBS	Chr10	11246451	A-T	Hetero	INTERGENIC
SBS	Chr10	12755478	T-C	Hetero	INTRON
SBS	Chr11	12821386	G-A	Hetero	INTERGENIC
SBS	Chr11	14547969	T-C	Hetero	INTRON
SBS	Chr11	16391316	C-A	Hetero	INTERGENIC
SBS	Chr11	24452617	G-A	Hetero	INTERGENIC
SBS	Chr11	28354753	G-A	Hetero	INTERGENIC
SBS	Chr12	827087	G-A	Hetero	INTERGENIC
SBS	Chr12	14945631	C-T	Hetero	INTERGENIC
SBS	Chr12	18310834	G-T	Hetero	INTERGENIC
SBS	Chr12	18413780	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g134300
SBS	Chr12	19479456	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	835001	864000	28999	OsKitaake08g011800
Deletion	Chr7	2164474	2164478	4
Deletion	Chr2	2285317	2285318	1
Deletion	Chr2	2887835	2887842	7
Deletion	Chr12	2904231	2904232	1
Deletion	Chr1	9828727	9828732	5
Deletion	Chr4	11480632	11480633	1
Deletion	Chr4	13873693	13873697	4
Deletion	Chr9	18702116	18702121	5
Deletion	Chr2	23710204	23710205	1
Deletion	Chr4	24602278	24602300	22
Deletion	Chr7	28475010	28475011	1
Deletion	Chr4	30111372	30111376	4
Deletion	Chr2	31271013	31271022	9
Deletion	Chr1	43052689	43052691	2	OsKitaake01g475000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes