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| Mutant Information |
|---|
| Mutant Name | FN2544-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2544-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10818569 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 10818570 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 11632372 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 1896936 | C-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 20655608 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 25785726 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 34403102 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 19268380 | C-A,T | Hetero | INTERGENIC | |
| SBS | Chr3 | 21898517 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 29311439 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 36366632 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g403400 |
| SBS | Chr4 | 2151949 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 2199048 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7374510 | G-A | Homo | INTRON | |
| SBS | Chr4 | 17127295 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 24977568 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g167100 |
| SBS | Chr4 | 28067679 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 34390419 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g285800 |
| SBS | Chr5 | 6372434 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 28020961 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 28229866 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26695925 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 536976 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 22318905 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26569254 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 2610476 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 4782594 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 12343709 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 28580173 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g244900 |
| SBS | Chr9 | 7640168 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 10489499 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 13992659 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 17901898 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 2081671 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 6524866 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 14873878 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 19902741 | G-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2545715 | 2545718 | 3 | |
| Deletion | Chr11 | 4369584 | 4369599 | 15 | |
| Deletion | Chr4 | 6424510 | 6424521 | 11 | |
| Deletion | Chr9 | 14827519 | 14827542 | 23 | |
| Deletion | Chr5 | 15426733 | 15426735 | 2 | OsKitaake05g118300 |
| Deletion | Chr5 | 17304229 | 17304230 | 1 | |
| Deletion | Chr1 | 21498793 | 21498809 | 16 | |
| Deletion | Chr9 | 21966731 | 21966741 | 10 | OsKitaake09g195600 |
| Deletion | Chr11 | 24080195 | 24080196 | 1 | |
| Deletion | Chr3 | 30579202 | 30579211 | 9 | |
| Deletion | Chr3 | 35090161 | 35090341 | 180 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 27680367 | 27680373 | 5 | |
| Insertion | Chr10 | 20255972 | 20255975 | 2 |