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Mutant Information

Mutant Name	FN2545-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2545-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3994610 T-A Homo INTERGENIC
SBS Chr1 7957065 A-C Hetero INTERGENIC
SBS Chr1 15536580 C-T Hetero INTERGENIC
SBS Chr1 28779899 G-A Hetero INTERGENIC
SBS Chr1 31139433 A-G Hetero INTERGENIC
SBS Chr2 10001717 T-C Homo INTRON
SBS Chr2 11101603 G-A Hetero INTERGENIC
SBS Chr2 15018222 A-G Hetero INTERGENIC
SBS Chr2 16278730 T-C Hetero INTERGENIC
SBS Chr2 18149133 C-G Homo NON_SYNONYMOUS_CODING OsKitaake02g180500
SBS Chr2 28968826 G-A Hetero INTERGENIC
SBS Chr2 29702274 G-A Homo INTERGENIC
SBS Chr2 29780952 T-C Hetero INTERGENIC
SBS Chr2 32529197 G-A Hetero INTERGENIC
SBS Chr2 36098253 T-A Homo INTERGENIC
SBS Chr3 5119765 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g073500
SBS Chr3 18044149 A-C Hetero INTERGENIC
SBS Chr3 25516479 C-A Hetero INTERGENIC
SBS Chr3 26315551 C-A Hetero INTERGENIC
SBS Chr4 11500515 G-A Hetero INTERGENIC
SBS Chr4 20370489 C-T Hetero INTERGENIC
SBS Chr4 21372498 C-T Hetero UTR_3_PRIME
SBS Chr4 27061887 G-A Hetero INTERGENIC
SBS Chr4 27178653 G-A Hetero INTERGENIC
SBS Chr5 2744850 C-T Hetero INTERGENIC
SBS Chr5 2848136 T-C Hetero INTRON
SBS Chr5 4525903 G-A Hetero INTERGENIC
SBS Chr5 4680962 A-G Hetero INTERGENIC
SBS Chr5 4787539 A-G Hetero INTERGENIC
SBS Chr5 14657957 G-A Hetero INTERGENIC
SBS Chr5 16982520 C-T Hetero INTERGENIC
SBS Chr6 8929721 C-T Hetero UTR_3_PRIME
SBS Chr6 15075271 G-A Hetero INTERGENIC
SBS Chr6 20827899 G-A Hetero INTERGENIC
SBS Chr6 22722157 A-C Hetero INTERGENIC
SBS Chr6 23376086 T-A Hetero INTERGENIC
SBS Chr7 6709997 C-T Homo INTERGENIC
SBS Chr7 13618825 C-T Hetero INTERGENIC
SBS Chr7 19907228 G-A Hetero INTERGENIC
SBS Chr8 1028509 A-C Hetero INTERGENIC
SBS Chr8 9391782 A-T Hetero INTERGENIC
SBS Chr8 13770090 T-C Hetero INTERGENIC
SBS Chr8 14881798 G-A Hetero INTERGENIC
SBS Chr8 15992495 C-G Hetero INTERGENIC
SBS Chr8 24701063 A-C Hetero INTERGENIC
SBS Chr9 10483818 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g065400
SBS Chr9 10937845 G-A Hetero INTRON
SBS Chr11 2318513 G-T Hetero INTERGENIC
SBS Chr11 2579966 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 8373305 T-G Homo UTR_5_PRIME
SBS Chr11 8541762 C-A Hetero INTERGENIC
SBS Chr11 11579796 T-A Homo INTRON
SBS Chr11 12281885 C-G Homo UTR_3_PRIME
SBS Chr11 16640715 C-A Hetero INTERGENIC
SBS Chr11 16640716 A-G Hetero INTERGENIC
SBS Chr12 19735636 G-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 4345001 4351000 5999 OsKitaake07g054600
Deletion Chr9 4586611 4586735 124
Deletion Chr6 6715555 6715557 2
Deletion Chr8 7190811 7190820 9
Deletion Chr1 10440001 10560000 119999 14
Deletion Chr1 10567001 10684000 116999 7
Deletion Chr7 23288010 23288011 1
Deletion Chr6 24833592 24833596 4
Deletion Chr8 28020276 28020291 15
Deletion Chr8 28252127 28252129 2
Deletion Chr1 32009690 32009694 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5241306 5241309 2
Insertion Chr12 11211139 11211141 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 19219924 19580745
Inversion Chr3 19219940 19580750

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3994610	T-A	Homo	INTERGENIC
SBS	Chr1	7957065	A-C	Hetero	INTERGENIC
SBS	Chr1	15536580	C-T	Hetero	INTERGENIC
SBS	Chr1	28779899	G-A	Hetero	INTERGENIC
SBS	Chr1	31139433	A-G	Hetero	INTERGENIC
SBS	Chr2	10001717	T-C	Homo	INTRON
SBS	Chr2	11101603	G-A	Hetero	INTERGENIC
SBS	Chr2	15018222	A-G	Hetero	INTERGENIC
SBS	Chr2	16278730	T-C	Hetero	INTERGENIC
SBS	Chr2	18149133	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g180500
SBS	Chr2	28968826	G-A	Hetero	INTERGENIC
SBS	Chr2	29702274	G-A	Homo	INTERGENIC
SBS	Chr2	29780952	T-C	Hetero	INTERGENIC
SBS	Chr2	32529197	G-A	Hetero	INTERGENIC
SBS	Chr2	36098253	T-A	Homo	INTERGENIC
SBS	Chr3	5119765	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g073500
SBS	Chr3	18044149	A-C	Hetero	INTERGENIC
SBS	Chr3	25516479	C-A	Hetero	INTERGENIC
SBS	Chr3	26315551	C-A	Hetero	INTERGENIC
SBS	Chr4	11500515	G-A	Hetero	INTERGENIC
SBS	Chr4	20370489	C-T	Hetero	INTERGENIC
SBS	Chr4	21372498	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	27061887	G-A	Hetero	INTERGENIC
SBS	Chr4	27178653	G-A	Hetero	INTERGENIC
SBS	Chr5	2744850	C-T	Hetero	INTERGENIC
SBS	Chr5	2848136	T-C	Hetero	INTRON
SBS	Chr5	4525903	G-A	Hetero	INTERGENIC
SBS	Chr5	4680962	A-G	Hetero	INTERGENIC
SBS	Chr5	4787539	A-G	Hetero	INTERGENIC
SBS	Chr5	14657957	G-A	Hetero	INTERGENIC
SBS	Chr5	16982520	C-T	Hetero	INTERGENIC
SBS	Chr6	8929721	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	15075271	G-A	Hetero	INTERGENIC
SBS	Chr6	20827899	G-A	Hetero	INTERGENIC
SBS	Chr6	22722157	A-C	Hetero	INTERGENIC
SBS	Chr6	23376086	T-A	Hetero	INTERGENIC
SBS	Chr7	6709997	C-T	Homo	INTERGENIC
SBS	Chr7	13618825	C-T	Hetero	INTERGENIC
SBS	Chr7	19907228	G-A	Hetero	INTERGENIC
SBS	Chr8	1028509	A-C	Hetero	INTERGENIC
SBS	Chr8	9391782	A-T	Hetero	INTERGENIC
SBS	Chr8	13770090	T-C	Hetero	INTERGENIC
SBS	Chr8	14881798	G-A	Hetero	INTERGENIC
SBS	Chr8	15992495	C-G	Hetero	INTERGENIC
SBS	Chr8	24701063	A-C	Hetero	INTERGENIC
SBS	Chr9	10483818	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g065400
SBS	Chr9	10937845	G-A	Hetero	INTRON
SBS	Chr11	2318513	G-T	Hetero	INTERGENIC
SBS	Chr11	2579966	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	8373305	T-G	Homo	UTR_5_PRIME
SBS	Chr11	8541762	C-A	Hetero	INTERGENIC
SBS	Chr11	11579796	T-A	Homo	INTRON
SBS	Chr11	12281885	C-G	Homo	UTR_3_PRIME
SBS	Chr11	16640715	C-A	Hetero	INTERGENIC
SBS	Chr11	16640716	A-G	Hetero	INTERGENIC
SBS	Chr12	19735636	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	4345001	4351000	5999	OsKitaake07g054600
Deletion	Chr9	4586611	4586735	124
Deletion	Chr6	6715555	6715557	2
Deletion	Chr8	7190811	7190820	9
Deletion	Chr1	10440001	10560000	119999	14
Deletion	Chr1	10567001	10684000	116999	7
Deletion	Chr7	23288010	23288011	1
Deletion	Chr6	24833592	24833596	4
Deletion	Chr8	28020276	28020291	15
Deletion	Chr8	28252127	28252129	2
Deletion	Chr1	32009690	32009694	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	19219924	19580745
Inversion	Chr3	19219940	19580750

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes