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| Mutant Information |
|---|
| Mutant Name | FN2546-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2546-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 41
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16587 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g000200 |
| SBS | Chr1 | 10190861 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 25623151 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27419133 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 33421701 | C-T | Homo | INTRON | |
| SBS | Chr2 | 7084019 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 12610754 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 18158563 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 20015720 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 30797170 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 161370 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 4371027 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 6974013 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 10386218 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g142000 |
| SBS | Chr3 | 15187919 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 28402825 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31051123 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 31363117 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 1386846 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3416029 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 5905690 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 17886191 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21442387 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 491376 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 2103078 | G-C | Homo | INTERGENIC | |
| SBS | Chr5 | 2764240 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 17316263 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 22176438 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 22748718 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 27576265 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 4647282 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 6901449 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20293058 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 3460636 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 7165865 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12568944 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 22899066 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8299712 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 381979 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 2644935 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 27077115 | A-T | Hetero | INTRON |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 5930631 | 5930632 | 1 | |
| Deletion | Chr4 | 9148015 | 9148024 | 9 | |
| Deletion | Chr6 | 9539974 | 9539975 | 1 | |
| Deletion | Chr4 | 12988232 | 12988236 | 4 | |
| Deletion | Chr2 | 14359020 | 14359021 | 1 | |
| Deletion | Chr12 | 16710577 | 16710579 | 2 | |
| Deletion | Chr5 | 17211797 | 17211803 | 6 | OsKitaake05g131900 |
| Deletion | Chr4 | 17250225 | 17250231 | 6 | |
| Deletion | Chr3 | 22390333 | 22390334 | 1 | |
| Deletion | Chr11 | 29684074 | 29684086 | 12 |
Insertions: 5