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Mutant Information

Mutant Name	FN2547-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2547-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2847319 A-G Homo INTERGENIC
SBS Chr1 17902441 G-A Hetero INTERGENIC
SBS Chr1 22439904 A-G Hetero INTRON
SBS Chr1 27403660 G-T Hetero INTERGENIC
SBS Chr1 29501667 A-T Hetero UTR_5_PRIME
SBS Chr1 38339810 G-A Hetero INTERGENIC
SBS Chr1 39758456 G-T Hetero INTERGENIC
SBS Chr2 9014782 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g112900
SBS Chr2 9040419 A-T Hetero INTERGENIC
SBS Chr3 8571777 G-T Hetero UTR_3_PRIME
SBS Chr3 12844325 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 17787758 G-T Hetero INTERGENIC
SBS Chr4 19620740 C-G Hetero INTERGENIC
SBS Chr4 24476960 C-T Hetero INTERGENIC
SBS Chr4 29910412 G-A Homo INTERGENIC
SBS Chr5 847250 T-A Hetero INTERGENIC
SBS Chr5 2038025 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g023100
SBS Chr5 4687284 C-T Hetero INTERGENIC
SBS Chr5 12127706 G-A Hetero INTERGENIC
SBS Chr5 16574068 C-G Hetero INTERGENIC
SBS Chr5 23881413 C-A Hetero INTERGENIC
SBS Chr5 24203632 G-T Hetero SPLICE_SITE_DONOR OsKitaake05g215500
SBS Chr5 24253373 A-C Hetero INTRON
SBS Chr5 27278001 A-G Hetero INTERGENIC
SBS Chr6 172692 C-T Hetero INTRON
SBS Chr6 8374484 G-A Hetero INTERGENIC
SBS Chr6 9908047 A-G Hetero INTERGENIC
SBS Chr7 5201870 A-C Hetero INTERGENIC
SBS Chr7 5500022 T-A Hetero INTERGENIC
SBS Chr7 9563930 C-A Hetero INTERGENIC
SBS Chr8 1770949 G-T Homo INTERGENIC
SBS Chr8 10153002 G-A Hetero INTERGENIC
SBS Chr8 15764753 G-T Homo INTRON
SBS Chr8 25839736 C-T Hetero INTERGENIC
SBS Chr8 28031078 G-T Hetero INTERGENIC
SBS Chr9 9908487 G-T Homo INTERGENIC
SBS Chr10 19774376 T-A Hetero INTRON
SBS Chr10 20874542 A-T Hetero INTERGENIC
SBS Chr11 10849943 A-G Hetero INTERGENIC
SBS Chr12 8456213 C-T Hetero INTERGENIC
SBS Chr12 14494232 C-G Hetero INTERGENIC
SBS Chr12 20991354 C-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 10349250 10349377 127
Deletion Chr8 11063309 11063312 3
Deletion Chr8 12310839 12310850 11
Deletion Chr2 13818676 13818840 164
Deletion Chr11 17058362 17058425 63 OsKitaake11g133400
Deletion Chr6 22664656 22664658 2
Deletion Chr4 27343001 27388000 44999 9
Deletion Chr8 27409506 27409515 9
Deletion Chr4 31456001 31461000 4999 2
Deletion Chr2 31870001 31907000 36999 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 28766637 28766640 2
Insertion Chr2 12115009 12115011 1 OsKitaake02g137600
Insertion Chr4 9574522 9574524 1
Insertion Chr8 22823116 22823118 1

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 2300529 Chr2 30745440 OsKitaake06g029800
Translocation Chr6 2301676 Chr2 30745428 OsKitaake06g029900
Translocation Chr8 6142034 Chr1 2944493
Translocation Chr8 7899378 Chr2 31028231
Translocation Chr9 11103710 Chr7 9196203
Translocation Chr12 12723198 Chr10 7593922
Translocation Chr8 27184164 Chr1 20127162

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2847319	A-G	Homo	INTERGENIC
SBS	Chr1	17902441	G-A	Hetero	INTERGENIC
SBS	Chr1	22439904	A-G	Hetero	INTRON
SBS	Chr1	27403660	G-T	Hetero	INTERGENIC
SBS	Chr1	29501667	A-T	Hetero	UTR_5_PRIME
SBS	Chr1	38339810	G-A	Hetero	INTERGENIC
SBS	Chr1	39758456	G-T	Hetero	INTERGENIC
SBS	Chr2	9014782	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g112900
SBS	Chr2	9040419	A-T	Hetero	INTERGENIC
SBS	Chr3	8571777	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	12844325	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	17787758	G-T	Hetero	INTERGENIC
SBS	Chr4	19620740	C-G	Hetero	INTERGENIC
SBS	Chr4	24476960	C-T	Hetero	INTERGENIC
SBS	Chr4	29910412	G-A	Homo	INTERGENIC
SBS	Chr5	847250	T-A	Hetero	INTERGENIC
SBS	Chr5	2038025	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g023100
SBS	Chr5	4687284	C-T	Hetero	INTERGENIC
SBS	Chr5	12127706	G-A	Hetero	INTERGENIC
SBS	Chr5	16574068	C-G	Hetero	INTERGENIC
SBS	Chr5	23881413	C-A	Hetero	INTERGENIC
SBS	Chr5	24203632	G-T	Hetero	SPLICE_SITE_DONOR	OsKitaake05g215500
SBS	Chr5	24253373	A-C	Hetero	INTRON
SBS	Chr5	27278001	A-G	Hetero	INTERGENIC
SBS	Chr6	172692	C-T	Hetero	INTRON
SBS	Chr6	8374484	G-A	Hetero	INTERGENIC
SBS	Chr6	9908047	A-G	Hetero	INTERGENIC
SBS	Chr7	5201870	A-C	Hetero	INTERGENIC
SBS	Chr7	5500022	T-A	Hetero	INTERGENIC
SBS	Chr7	9563930	C-A	Hetero	INTERGENIC
SBS	Chr8	1770949	G-T	Homo	INTERGENIC
SBS	Chr8	10153002	G-A	Hetero	INTERGENIC
SBS	Chr8	15764753	G-T	Homo	INTRON
SBS	Chr8	25839736	C-T	Hetero	INTERGENIC
SBS	Chr8	28031078	G-T	Hetero	INTERGENIC
SBS	Chr9	9908487	G-T	Homo	INTERGENIC
SBS	Chr10	19774376	T-A	Hetero	INTRON
SBS	Chr10	20874542	A-T	Hetero	INTERGENIC
SBS	Chr11	10849943	A-G	Hetero	INTERGENIC
SBS	Chr12	8456213	C-T	Hetero	INTERGENIC
SBS	Chr12	14494232	C-G	Hetero	INTERGENIC
SBS	Chr12	20991354	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	10349250	10349377	127
Deletion	Chr8	11063309	11063312	3
Deletion	Chr8	12310839	12310850	11
Deletion	Chr2	13818676	13818840	164
Deletion	Chr11	17058362	17058425	63	OsKitaake11g133400
Deletion	Chr6	22664656	22664658	2
Deletion	Chr4	27343001	27388000	44999	9
Deletion	Chr8	27409506	27409515	9
Deletion	Chr4	31456001	31461000	4999	2
Deletion	Chr2	31870001	31907000	36999	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	2300529	Chr2	30745440	OsKitaake06g029800
Translocation	Chr6	2301676	Chr2	30745428	OsKitaake06g029900
Translocation	Chr8	6142034	Chr1	2944493
Translocation	Chr8	7899378	Chr2	31028231
Translocation	Chr9	11103710	Chr7	9196203
Translocation	Chr12	12723198	Chr10	7593922
Translocation	Chr8	27184164	Chr1	20127162

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes