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| Mutant Information |
|---|
| Mutant Name | FN2549-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2549-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3821511 | C-G | Hetero | INTRON | |
| SBS | Chr1 | 4082071 | T-G | Hetero | INTRON | |
| SBS | Chr1 | 4082350 | C-A | Hetero | INTRON | |
| SBS | Chr1 | 10507174 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 10730904 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 20162918 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 28439762 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 36090084 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g382800 |
| SBS | Chr2 | 26215989 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 18237828 | T-G | Hetero | INTRON | |
| SBS | Chr4 | 5349869 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 12144388 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 19666302 | C-G | Hetero | INTRON | |
| SBS | Chr6 | 1155732 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 5599394 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8507005 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 9395909 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 9971121 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 26446660 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 5352847 | T-A | Hetero | INTRON | |
| SBS | Chr9 | 7456478 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 9799387 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 17599319 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g133000 |
| SBS | Chr10 | 23838383 | C-T | Homo | INTRON | |
| SBS | Chr11 | 7293197 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 7293198 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 9752941 | T-G | Homo | INTERGENIC | |
| SBS | Chr11 | 10575189 | T-G | Hetero | INTRON | |
| SBS | Chr12 | 9102252 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 9302872 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14495827 | C-T | Hetero | INTERGENIC |
Deletions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 409104 | 409106 | 2 | |
| Deletion | Chr12 | 14229930 | 14229947 | 17 | |
| Deletion | Chr5 | 20410365 | 20410366 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 21013889 | 21013891 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 98105 | 200471 | OsKitaake03g003000 |
| Inversion | Chr3 | 98116 | 200721 | OsKitaake03g003000 |
Translocations: 14
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 200478 | Chr2 | 14347032 | OsKitaake03g003000 |
| Translocation | Chr3 | 200702 | Chr2 | 14347034 | OsKitaake03g003000 |
| Translocation | Chr9 | 5725346 | Chr6 | 726025 | |
| Translocation | Chr9 | 6993761 | Chr3 | 22168868 | OsKitaake03g241635 |
| Translocation | Chr12 | 7097214 | Chr6 | 15717676 | |
| Translocation | Chr9 | 7883477 | Chr3 | 22168876 | 2 |
| Translocation | Chr6 | 7910147 | Chr2 | 9263339 | |
| Translocation | Chr7 | 8866316 | Chr4 | 8149133 | |
| Translocation | Chr9 | 9860486 | Chr7 | 29461767 | OsKitaake07g283600 |
| Translocation | Chr12 | 13591121 | Chr7 | 9868972 | |
| Translocation | Chr7 | 16308427 | Chr5 | 5383430 | |
| Translocation | Chr10 | 17435187 | Chr9 | 8278239 | OsKitaake10g118800 |
| Translocation | Chr10 | 20147017 | Chr8 | 18852984 | OsKitaake10g152800 |
| Translocation | Chr11 | 29306823 | Chr8 | 6798167 |