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| Mutant Information |
|---|
| Mutant Name | FN2550-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2550-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 28407604 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 36330580 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 37252605 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 42059983 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 12339370 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27162073 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 36463409 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 2158307 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 46704 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 1211829 | G-A | Homo | INTRON | |
| SBS | Chr4 | 1464933 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 6544222 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 14168485 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 32679986 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2753730 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 3100321 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 14765031 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 16590048 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 9674471 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 11636017 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 27067201 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 29308086 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20417454 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14871572 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 18436107 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 1846796 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17607755 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 5319626 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 9983947 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g101701 |
| SBS | Chr11 | 15261779 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 4794021 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6261933 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 9277463 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 21274477 | G-T | Hetero | INTERGENIC |
Deletions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 6212402 | 6212517 | 115 | OsKitaake01g078900 |
| Deletion | Chr2 | 19647001 | 19652000 | 4999 | |
| Deletion | Chr5 | 29314832 | 29314834 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 1842027 | 1842030 | 2 | |
| Insertion | Chr1 | 19517592 | 19517594 | 1 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 4431437 | Chr9 | 210612 | |
| Translocation | Chr8 | 5843814 | Chr5 | 4297001 | |
| Translocation | Chr11 | 14013631 | Chr5 | 11989379 | |
| Translocation | Chr3 | 15626229 | Chr1 | 14896678 | 2 |
| Translocation | Chr3 | 15626237 | Chr1 | 14892651 | 2 |