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Mutant Information

Mutant Name	FN2551-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2551-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 819065 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g008916
SBS Chr1 4487012 T-G Hetero INTRON
SBS Chr1 7266765 G-A Hetero INTERGENIC
SBS Chr1 13410090 A-G Homo INTERGENIC
SBS Chr1 24451728 G-C Hetero INTERGENIC
SBS Chr1 42059439 A-G Hetero INTERGENIC
SBS Chr1 43518987 C-T Homo INTERGENIC
SBS Chr2 17960714 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g178700
SBS Chr2 29683944 T-G Hetero INTERGENIC
SBS Chr2 34559294 T-C Hetero INTERGENIC
SBS Chr3 20126581 C-T Hetero INTERGENIC
SBS Chr3 26032314 G-A Hetero INTRON
SBS Chr3 28088754 C-T Hetero UTR_3_PRIME
SBS Chr4 3901967 C-A Hetero INTERGENIC
SBS Chr4 8254660 T-A Homo INTERGENIC
SBS Chr4 9295248 G-A Hetero INTERGENIC
SBS Chr4 15737763 C-T Homo INTERGENIC
SBS Chr4 16435161 G-A Hetero INTERGENIC
SBS Chr5 1862089 G-A Hetero INTERGENIC
SBS Chr5 30120662 G-C Hetero INTERGENIC
SBS Chr6 9061480 C-A Hetero INTERGENIC
SBS Chr6 21597802 A-C Hetero UTR_5_PRIME
SBS Chr6 21874233 C-T Hetero INTERGENIC
SBS Chr6 25275563 G-C Hetero INTERGENIC
SBS Chr7 3064050 T-C Hetero INTERGENIC
SBS Chr7 4650215 T-C Homo INTERGENIC
SBS Chr7 8904736 A-G Hetero INTRON
SBS Chr7 13528946 T-C Hetero INTERGENIC
SBS Chr7 16503851 G-A Hetero INTERGENIC
SBS Chr7 29485597 G-T Homo SPLICE_SITE_REGION
SBS Chr8 7905428 G-T Hetero INTERGENIC
SBS Chr8 17632165 T-A Hetero INTERGENIC
SBS Chr9 5175513 C-T Homo INTERGENIC
SBS Chr9 5480613 T-A Hetero INTERGENIC
SBS Chr9 9485925 T-G Homo NON_SYNONYMOUS_CODING OsKitaake09g057400
SBS Chr9 10793737 A-G Hetero INTRON
SBS Chr9 16799580 C-T Hetero INTERGENIC
SBS Chr9 19731313 A-T Homo INTRON
SBS Chr10 271623 C-T Hetero INTERGENIC
SBS Chr10 8547168 T-G Hetero INTERGENIC
SBS Chr10 11225483 G-A Hetero INTERGENIC
SBS Chr10 16839996 C-T Hetero INTERGENIC
SBS Chr11 10429730 T-G Hetero INTERGENIC
SBS Chr11 20029930 C-G Hetero INTERGENIC
SBS Chr11 20340088 G-A Hetero INTERGENIC
SBS Chr11 22014677 A-G Hetero INTERGENIC
SBS Chr11 23966446 G-A Hetero UTR_5_PRIME
SBS Chr11 27186460 C-T Hetero INTERGENIC
SBS Chr11 28129554 G-T Hetero INTERGENIC
SBS Chr12 5689928 C-G Homo INTERGENIC
SBS Chr12 20827350 T-C Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3093736 3093745 9
Deletion Chr11 4086189 4086202 13
Deletion Chr7 4209669 4209670 1
Deletion Chr12 5543001 5588000 44999 5
Deletion Chr6 8358642 8358645 3
Deletion Chr8 9101264 9101272 8
Deletion Chr2 10524165 10524166 1
Deletion Chr1 13205272 13205284 12
Deletion Chr9 14258289 14258293 4
Deletion Chr5 14699604 14699605 1
Deletion Chr6 18443159 18443168 9
Deletion Chr5 18555001 18728000 172999 6
Deletion Chr5 18776001 18888000 111999 13
Deletion Chr6 24519411 24519416 5
Deletion Chr3 25427231 25427233 2
Deletion Chr11 27211036 27211049 13
Deletion Chr4 34967265 34967266 1
Deletion Chr1 41750720 41750725 5 OsKitaake01g456400

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 9781505 9781513 7

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 37054742 37055101
Inversion Chr3 37054746 37055099

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 25290880 Chr6 10492638

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	819065	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g008916
SBS	Chr1	4487012	T-G	Hetero	INTRON
SBS	Chr1	7266765	G-A	Hetero	INTERGENIC
SBS	Chr1	13410090	A-G	Homo	INTERGENIC
SBS	Chr1	24451728	G-C	Hetero	INTERGENIC
SBS	Chr1	42059439	A-G	Hetero	INTERGENIC
SBS	Chr1	43518987	C-T	Homo	INTERGENIC
SBS	Chr2	17960714	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g178700
SBS	Chr2	29683944	T-G	Hetero	INTERGENIC
SBS	Chr2	34559294	T-C	Hetero	INTERGENIC
SBS	Chr3	20126581	C-T	Hetero	INTERGENIC
SBS	Chr3	26032314	G-A	Hetero	INTRON
SBS	Chr3	28088754	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	3901967	C-A	Hetero	INTERGENIC
SBS	Chr4	8254660	T-A	Homo	INTERGENIC
SBS	Chr4	9295248	G-A	Hetero	INTERGENIC
SBS	Chr4	15737763	C-T	Homo	INTERGENIC
SBS	Chr4	16435161	G-A	Hetero	INTERGENIC
SBS	Chr5	1862089	G-A	Hetero	INTERGENIC
SBS	Chr5	30120662	G-C	Hetero	INTERGENIC
SBS	Chr6	9061480	C-A	Hetero	INTERGENIC
SBS	Chr6	21597802	A-C	Hetero	UTR_5_PRIME
SBS	Chr6	21874233	C-T	Hetero	INTERGENIC
SBS	Chr6	25275563	G-C	Hetero	INTERGENIC
SBS	Chr7	3064050	T-C	Hetero	INTERGENIC
SBS	Chr7	4650215	T-C	Homo	INTERGENIC
SBS	Chr7	8904736	A-G	Hetero	INTRON
SBS	Chr7	13528946	T-C	Hetero	INTERGENIC
SBS	Chr7	16503851	G-A	Hetero	INTERGENIC
SBS	Chr7	29485597	G-T	Homo	SPLICE_SITE_REGION
SBS	Chr8	7905428	G-T	Hetero	INTERGENIC
SBS	Chr8	17632165	T-A	Hetero	INTERGENIC
SBS	Chr9	5175513	C-T	Homo	INTERGENIC
SBS	Chr9	5480613	T-A	Hetero	INTERGENIC
SBS	Chr9	9485925	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g057400
SBS	Chr9	10793737	A-G	Hetero	INTRON
SBS	Chr9	16799580	C-T	Hetero	INTERGENIC
SBS	Chr9	19731313	A-T	Homo	INTRON
SBS	Chr10	271623	C-T	Hetero	INTERGENIC
SBS	Chr10	8547168	T-G	Hetero	INTERGENIC
SBS	Chr10	11225483	G-A	Hetero	INTERGENIC
SBS	Chr10	16839996	C-T	Hetero	INTERGENIC
SBS	Chr11	10429730	T-G	Hetero	INTERGENIC
SBS	Chr11	20029930	C-G	Hetero	INTERGENIC
SBS	Chr11	20340088	G-A	Hetero	INTERGENIC
SBS	Chr11	22014677	A-G	Hetero	INTERGENIC
SBS	Chr11	23966446	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	27186460	C-T	Hetero	INTERGENIC
SBS	Chr11	28129554	G-T	Hetero	INTERGENIC
SBS	Chr12	5689928	C-G	Homo	INTERGENIC
SBS	Chr12	20827350	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3093736	3093745	9
Deletion	Chr11	4086189	4086202	13
Deletion	Chr7	4209669	4209670	1
Deletion	Chr12	5543001	5588000	44999	5
Deletion	Chr6	8358642	8358645	3
Deletion	Chr8	9101264	9101272	8
Deletion	Chr2	10524165	10524166	1
Deletion	Chr1	13205272	13205284	12
Deletion	Chr9	14258289	14258293	4
Deletion	Chr5	14699604	14699605	1
Deletion	Chr6	18443159	18443168	9
Deletion	Chr5	18555001	18728000	172999	6
Deletion	Chr5	18776001	18888000	111999	13
Deletion	Chr6	24519411	24519416	5
Deletion	Chr3	25427231	25427233	2
Deletion	Chr11	27211036	27211049	13
Deletion	Chr4	34967265	34967266	1
Deletion	Chr1	41750720	41750725	5	OsKitaake01g456400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	37054742	37055101
Inversion	Chr3	37054746	37055099

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes