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Mutant Information

Mutant Name	FN2553-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2553-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Homo INTERGENIC
SBS Chr1 12292745 T-A Hetero INTERGENIC
SBS Chr1 13715757 A-G Hetero INTRON
SBS Chr1 17099466 C-T Hetero INTERGENIC
SBS Chr1 17963955 C-A Hetero STOP_GAINED OsKitaake01g182200
SBS Chr1 20512199 C-T Hetero INTERGENIC
SBS Chr1 25905406 A-T Hetero INTERGENIC
SBS Chr1 42672985 C-T Hetero INTERGENIC
SBS Chr2 1274768 C-T Hetero INTERGENIC
SBS Chr2 12611138 T-G Homo INTRON
SBS Chr2 34238913 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 35194484 T-G Hetero INTERGENIC
SBS Chr3 7196714 G-A Hetero INTERGENIC
SBS Chr3 13395662 C-T Hetero INTERGENIC
SBS Chr3 23291231 T-A Hetero START_GAINED
SBS Chr3 36516046 G-T Homo INTERGENIC
SBS Chr3 36638746 G-A Hetero INTERGENIC
SBS Chr4 4486851 C-A Hetero INTERGENIC
SBS Chr4 19458197 C-A Hetero INTRON
SBS Chr4 24752157 G-A Hetero INTERGENIC
SBS Chr4 26936645 A-G Hetero INTRON
SBS Chr4 29238532 A-G Hetero INTRON
SBS Chr5 26729386 G-A Hetero INTERGENIC
SBS Chr5 27238073 G-A Hetero INTERGENIC
SBS Chr5 28364288 G-A Hetero INTERGENIC
SBS Chr6 5330344 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g071750
SBS Chr6 9392735 A-G Homo INTERGENIC
SBS Chr6 13705817 G-A Hetero INTERGENIC
SBS Chr6 27333445 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g246200
SBS Chr6 29732902 G-A Hetero UTR_3_PRIME
SBS Chr7 5059246 C-T Homo INTERGENIC
SBS Chr7 7740803 G-A Homo INTRON
SBS Chr7 28472691 G-T Hetero INTERGENIC
SBS Chr8 23062125 C-T Hetero INTERGENIC
SBS Chr8 26196531 C-T Hetero INTERGENIC
SBS Chr9 3431537 G-A Hetero INTERGENIC
SBS Chr9 9704719 G-A Hetero INTERGENIC
SBS Chr9 18779298 A-G Hetero INTERGENIC
SBS Chr9 21439961 G-A Hetero INTERGENIC
SBS Chr10 11685405 C-T Hetero INTERGENIC
SBS Chr10 12201657 G-A Hetero INTERGENIC
SBS Chr10 18832960 A-G Hetero SPLICE_SITE_REGION
SBS Chr11 2855986 G-A Homo INTERGENIC
SBS Chr11 10313369 C-T Hetero INTERGENIC
SBS Chr11 24709243 T-A Hetero INTERGENIC
SBS Chr12 2611191 G-A Hetero INTERGENIC
SBS Chr12 3534543 T-G Hetero INTERGENIC
SBS Chr12 4329322 A-T Hetero INTERGENIC
SBS Chr12 4329326 T-C Hetero INTERGENIC
SBS Chr12 5421883 C-T Hetero INTERGENIC
SBS Chr12 7263665 G-A Hetero INTRON
SBS Chr12 17622369 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1391001 1481000 89999 2
Deletion Chr11 2339816 2339818 2
Deletion Chr12 3644000 3644005 5
Deletion Chr11 8931778 8931780 2
Deletion Chr10 13751630 13751632 2
Deletion Chr6 17597728 17597735 7
Deletion Chr9 20159365 20159371 6
Deletion Chr6 24580370 24580372 2
Deletion Chr7 25244177 25244178 1
Deletion Chr3 28829801 28829821 20 OsKitaake03g298900

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21765199 21765203 3
Insertion Chr2 26837192 26837194 1
Insertion Chr10 2138793 2138796 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 1393768 1645491
Inversion Chr4 1478532 1645493

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 6482171 Chr3 19923751
Translocation Chr9 6491688 Chr3 19923743
Translocation Chr6 18377163 Chr5 20250438 2
Translocation Chr6 18377183 Chr5 20250705 OsKitaake06g168100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Homo	INTERGENIC
SBS	Chr1	12292745	T-A	Hetero	INTERGENIC
SBS	Chr1	13715757	A-G	Hetero	INTRON
SBS	Chr1	17099466	C-T	Hetero	INTERGENIC
SBS	Chr1	17963955	C-A	Hetero	STOP_GAINED	OsKitaake01g182200
SBS	Chr1	20512199	C-T	Hetero	INTERGENIC
SBS	Chr1	25905406	A-T	Hetero	INTERGENIC
SBS	Chr1	42672985	C-T	Hetero	INTERGENIC
SBS	Chr2	1274768	C-T	Hetero	INTERGENIC
SBS	Chr2	12611138	T-G	Homo	INTRON
SBS	Chr2	34238913	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	35194484	T-G	Hetero	INTERGENIC
SBS	Chr3	7196714	G-A	Hetero	INTERGENIC
SBS	Chr3	13395662	C-T	Hetero	INTERGENIC
SBS	Chr3	23291231	T-A	Hetero	START_GAINED
SBS	Chr3	36516046	G-T	Homo	INTERGENIC
SBS	Chr3	36638746	G-A	Hetero	INTERGENIC
SBS	Chr4	4486851	C-A	Hetero	INTERGENIC
SBS	Chr4	19458197	C-A	Hetero	INTRON
SBS	Chr4	24752157	G-A	Hetero	INTERGENIC
SBS	Chr4	26936645	A-G	Hetero	INTRON
SBS	Chr4	29238532	A-G	Hetero	INTRON
SBS	Chr5	26729386	G-A	Hetero	INTERGENIC
SBS	Chr5	27238073	G-A	Hetero	INTERGENIC
SBS	Chr5	28364288	G-A	Hetero	INTERGENIC
SBS	Chr6	5330344	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g071750
SBS	Chr6	9392735	A-G	Homo	INTERGENIC
SBS	Chr6	13705817	G-A	Hetero	INTERGENIC
SBS	Chr6	27333445	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g246200
SBS	Chr6	29732902	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	5059246	C-T	Homo	INTERGENIC
SBS	Chr7	7740803	G-A	Homo	INTRON
SBS	Chr7	28472691	G-T	Hetero	INTERGENIC
SBS	Chr8	23062125	C-T	Hetero	INTERGENIC
SBS	Chr8	26196531	C-T	Hetero	INTERGENIC
SBS	Chr9	3431537	G-A	Hetero	INTERGENIC
SBS	Chr9	9704719	G-A	Hetero	INTERGENIC
SBS	Chr9	18779298	A-G	Hetero	INTERGENIC
SBS	Chr9	21439961	G-A	Hetero	INTERGENIC
SBS	Chr10	11685405	C-T	Hetero	INTERGENIC
SBS	Chr10	12201657	G-A	Hetero	INTERGENIC
SBS	Chr10	18832960	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr11	2855986	G-A	Homo	INTERGENIC
SBS	Chr11	10313369	C-T	Hetero	INTERGENIC
SBS	Chr11	24709243	T-A	Hetero	INTERGENIC
SBS	Chr12	2611191	G-A	Hetero	INTERGENIC
SBS	Chr12	3534543	T-G	Hetero	INTERGENIC
SBS	Chr12	4329322	A-T	Hetero	INTERGENIC
SBS	Chr12	4329326	T-C	Hetero	INTERGENIC
SBS	Chr12	5421883	C-T	Hetero	INTERGENIC
SBS	Chr12	7263665	G-A	Hetero	INTRON
SBS	Chr12	17622369	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1391001	1481000	89999	2
Deletion	Chr11	2339816	2339818	2
Deletion	Chr12	3644000	3644005	5
Deletion	Chr11	8931778	8931780	2
Deletion	Chr10	13751630	13751632	2
Deletion	Chr6	17597728	17597735	7
Deletion	Chr9	20159365	20159371	6
Deletion	Chr6	24580370	24580372	2
Deletion	Chr7	25244177	25244178	1
Deletion	Chr3	28829801	28829821	20	OsKitaake03g298900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1393768	1645491
Inversion	Chr4	1478532	1645493

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes