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Mutant Information

Mutant Name	FN2554-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2554-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 68

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8137869 A-G Hetero INTERGENIC
SBS Chr1 11789814 G-A Hetero INTERGENIC
SBS Chr1 14271236 C-G Hetero INTERGENIC
SBS Chr1 28989938 G-T Hetero INTERGENIC
SBS Chr1 33287137 A-T Hetero INTERGENIC
SBS Chr1 36465429 G-A Hetero INTRON
SBS Chr2 4411977 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g061800
SBS Chr2 4411981 G-T Hetero SYNONYMOUS_CODING
SBS Chr2 13600833 G-T Hetero INTERGENIC
SBS Chr2 14642260 C-A Hetero INTERGENIC
SBS Chr2 16515336 C-A Hetero INTERGENIC
SBS Chr2 19233086 G-A Hetero INTERGENIC
SBS Chr2 23703226 G-T Hetero INTERGENIC
SBS Chr2 28304146 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 33419898 G-T Homo INTERGENIC
SBS Chr3 9048890 G-T Hetero INTRON
SBS Chr3 9048891 C-A Hetero INTRON
SBS Chr3 10315336 C-T Hetero UTR_3_PRIME
SBS Chr3 11087454 T-C Hetero UTR_5_PRIME
SBS Chr3 12399431 T-A Hetero UTR_3_PRIME
SBS Chr3 14011674 T-G Hetero INTERGENIC
SBS Chr3 17683191 C-T Hetero INTERGENIC
SBS Chr3 22417724 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 23701283 C-T Hetero INTERGENIC
SBS Chr3 29514087 C-T Hetero INTERGENIC
SBS Chr3 30504714 C-A Hetero UTR_3_PRIME
SBS Chr3 33132820 T-A Hetero INTERGENIC
SBS Chr4 1288664 G-A Hetero INTERGENIC
SBS Chr4 3393645 T-C Homo INTERGENIC
SBS Chr4 4219222 C-T Hetero INTERGENIC
SBS Chr4 14859466 G-T Hetero INTRON
SBS Chr4 15736069 C-T Hetero INTERGENIC
SBS Chr4 15736071 A-T Hetero INTERGENIC
SBS Chr4 28936640 T-C Hetero INTERGENIC
SBS Chr4 33209890 A-C Hetero INTERGENIC
SBS Chr4 33209891 T-A Hetero INTERGENIC
SBS Chr5 4323816 C-T Hetero INTERGENIC
SBS Chr5 13502272 C-T Hetero INTERGENIC
SBS Chr5 18631121 A-G Hetero INTERGENIC
SBS Chr5 19019340 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g148801
SBS Chr6 3157623 C-T Hetero INTERGENIC
SBS Chr6 20218400 T-A Hetero INTERGENIC
SBS Chr6 26076676 A-T Hetero INTERGENIC
SBS Chr6 27712523 G-A Hetero INTERGENIC
SBS Chr7 2317691 C-T Homo INTERGENIC
SBS Chr7 2764335 G-C Hetero INTERGENIC
SBS Chr7 2861980 G-A Homo INTERGENIC
SBS Chr7 6568760 T-C Hetero INTERGENIC
SBS Chr7 7029972 T-C Hetero INTERGENIC
SBS Chr7 9593093 C-A Hetero INTERGENIC
SBS Chr7 10499707 C-A Hetero INTERGENIC
SBS Chr7 19669427 G-A Homo SYNONYMOUS_CODING
SBS Chr8 5928006 G-C Homo INTERGENIC
SBS Chr8 16668956 G-A Hetero INTRON
SBS Chr8 17140415 G-T Homo INTERGENIC
SBS Chr8 17193274 G-A Hetero INTERGENIC
SBS Chr8 17868208 A-T Homo INTERGENIC
SBS Chr9 7428315 T-A Homo INTERGENIC
SBS Chr9 7522753 C-G Homo INTRON
SBS Chr9 12051704 G-A Hetero INTERGENIC
SBS Chr9 18762800 T-G Homo INTRON
SBS Chr9 18762801 C-T Homo INTRON
SBS Chr10 11754285 C-T Hetero INTERGENIC
SBS Chr10 11944966 T-A Hetero INTERGENIC
SBS Chr11 2912939 C-T Hetero INTERGENIC
SBS Chr11 21855413 A-G Hetero INTRON
SBS Chr12 85695 T-C Hetero INTERGENIC
SBS Chr12 4379111 C-G Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 36107 36123 16
Deletion Chr8 1436503 1436517 14
Deletion Chr12 7105200 7105211 11
Deletion Chr11 10033561 10033572 11
Deletion Chr1 13003288 13003293 5
Deletion Chr9 16331573 16331574 1
Deletion Chr2 16749783 16749790 7
Deletion Chr3 18110239 18110240 1
Deletion Chr4 19931222 19931226 4
Deletion Chr11 24659559 24659560 1 OsKitaake11g199700
Deletion Chr2 29072532 29072539 7
Deletion Chr3 32884558 32884572 14
Deletion Chr4 36345400 36345403 3
Deletion Chr1 37256402 37256403 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43984359 43984362 2
Insertion Chr5 18507813 18507816 2
Insertion Chr9 21719459 21719462 2
Insertion Chr4 31965684 31965686 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 19017040 19413031 OsKitaake10g136000
Inversion Chr10 19020627 19413036 OsKitaake10g136000
Inversion Chr1 40330035 40922434 2
Inversion Chr1 40330046 40922443 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 19017059 Chr3 1122916 2
Translocation Chr10 19020607 Chr3 1122835 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8137869	A-G	Hetero	INTERGENIC
SBS	Chr1	11789814	G-A	Hetero	INTERGENIC
SBS	Chr1	14271236	C-G	Hetero	INTERGENIC
SBS	Chr1	28989938	G-T	Hetero	INTERGENIC
SBS	Chr1	33287137	A-T	Hetero	INTERGENIC
SBS	Chr1	36465429	G-A	Hetero	INTRON
SBS	Chr2	4411977	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g061800
SBS	Chr2	4411981	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	13600833	G-T	Hetero	INTERGENIC
SBS	Chr2	14642260	C-A	Hetero	INTERGENIC
SBS	Chr2	16515336	C-A	Hetero	INTERGENIC
SBS	Chr2	19233086	G-A	Hetero	INTERGENIC
SBS	Chr2	23703226	G-T	Hetero	INTERGENIC
SBS	Chr2	28304146	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	33419898	G-T	Homo	INTERGENIC
SBS	Chr3	9048890	G-T	Hetero	INTRON
SBS	Chr3	9048891	C-A	Hetero	INTRON
SBS	Chr3	10315336	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	11087454	T-C	Hetero	UTR_5_PRIME
SBS	Chr3	12399431	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	14011674	T-G	Hetero	INTERGENIC
SBS	Chr3	17683191	C-T	Hetero	INTERGENIC
SBS	Chr3	22417724	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	23701283	C-T	Hetero	INTERGENIC
SBS	Chr3	29514087	C-T	Hetero	INTERGENIC
SBS	Chr3	30504714	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	33132820	T-A	Hetero	INTERGENIC
SBS	Chr4	1288664	G-A	Hetero	INTERGENIC
SBS	Chr4	3393645	T-C	Homo	INTERGENIC
SBS	Chr4	4219222	C-T	Hetero	INTERGENIC
SBS	Chr4	14859466	G-T	Hetero	INTRON
SBS	Chr4	15736069	C-T	Hetero	INTERGENIC
SBS	Chr4	15736071	A-T	Hetero	INTERGENIC
SBS	Chr4	28936640	T-C	Hetero	INTERGENIC
SBS	Chr4	33209890	A-C	Hetero	INTERGENIC
SBS	Chr4	33209891	T-A	Hetero	INTERGENIC
SBS	Chr5	4323816	C-T	Hetero	INTERGENIC
SBS	Chr5	13502272	C-T	Hetero	INTERGENIC
SBS	Chr5	18631121	A-G	Hetero	INTERGENIC
SBS	Chr5	19019340	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g148801
SBS	Chr6	3157623	C-T	Hetero	INTERGENIC
SBS	Chr6	20218400	T-A	Hetero	INTERGENIC
SBS	Chr6	26076676	A-T	Hetero	INTERGENIC
SBS	Chr6	27712523	G-A	Hetero	INTERGENIC
SBS	Chr7	2317691	C-T	Homo	INTERGENIC
SBS	Chr7	2764335	G-C	Hetero	INTERGENIC
SBS	Chr7	2861980	G-A	Homo	INTERGENIC
SBS	Chr7	6568760	T-C	Hetero	INTERGENIC
SBS	Chr7	7029972	T-C	Hetero	INTERGENIC
SBS	Chr7	9593093	C-A	Hetero	INTERGENIC
SBS	Chr7	10499707	C-A	Hetero	INTERGENIC
SBS	Chr7	19669427	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr8	5928006	G-C	Homo	INTERGENIC
SBS	Chr8	16668956	G-A	Hetero	INTRON
SBS	Chr8	17140415	G-T	Homo	INTERGENIC
SBS	Chr8	17193274	G-A	Hetero	INTERGENIC
SBS	Chr8	17868208	A-T	Homo	INTERGENIC
SBS	Chr9	7428315	T-A	Homo	INTERGENIC
SBS	Chr9	7522753	C-G	Homo	INTRON
SBS	Chr9	12051704	G-A	Hetero	INTERGENIC
SBS	Chr9	18762800	T-G	Homo	INTRON
SBS	Chr9	18762801	C-T	Homo	INTRON
SBS	Chr10	11754285	C-T	Hetero	INTERGENIC
SBS	Chr10	11944966	T-A	Hetero	INTERGENIC
SBS	Chr11	2912939	C-T	Hetero	INTERGENIC
SBS	Chr11	21855413	A-G	Hetero	INTRON
SBS	Chr12	85695	T-C	Hetero	INTERGENIC
SBS	Chr12	4379111	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	36107	36123	16
Deletion	Chr8	1436503	1436517	14
Deletion	Chr12	7105200	7105211	11
Deletion	Chr11	10033561	10033572	11
Deletion	Chr1	13003288	13003293	5
Deletion	Chr9	16331573	16331574	1
Deletion	Chr2	16749783	16749790	7
Deletion	Chr3	18110239	18110240	1
Deletion	Chr4	19931222	19931226	4
Deletion	Chr11	24659559	24659560	1	OsKitaake11g199700
Deletion	Chr2	29072532	29072539	7
Deletion	Chr3	32884558	32884572	14
Deletion	Chr4	36345400	36345403	3
Deletion	Chr1	37256402	37256403	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	19017040	19413031	OsKitaake10g136000
Inversion	Chr10	19020627	19413036	OsKitaake10g136000
Inversion	Chr1	40330035	40922434	2
Inversion	Chr1	40330046	40922443	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes