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Mutant Information

Mutant Name	FN2555-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2555-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10071682 C-A Hetero INTERGENIC
SBS Chr1 15608222 C-T Homo INTERGENIC
SBS Chr1 30237458 G-T Hetero INTRON
SBS Chr2 27022244 T-G Homo INTERGENIC
SBS Chr2 31326136 A-G Hetero INTERGENIC
SBS Chr3 13191865 C-A Hetero INTRON
SBS Chr3 19182157 C-T Hetero INTERGENIC
SBS Chr4 11238121 C-T Homo INTERGENIC
SBS Chr4 16217350 G-T Hetero INTERGENIC
SBS Chr4 18504104 G-A Hetero INTERGENIC
SBS Chr4 21100002 A-T Hetero INTERGENIC
SBS Chr4 32943643 A-T Hetero INTERGENIC
SBS Chr4 33595077 C-A Hetero UTR_5_PRIME
SBS Chr5 11505606 G-A Hetero INTERGENIC
SBS Chr5 11505607 C-T Hetero INTERGENIC
SBS Chr5 11505608 T-A Hetero INTERGENIC
SBS Chr5 16615097 T-C Hetero INTERGENIC
SBS Chr5 27039792 A-G Homo NON_SYNONYMOUS_CODING OsKitaake05g242400
SBS Chr6 29137798 A-G Hetero INTRON
SBS Chr7 10478687 C-A Hetero INTERGENIC
SBS Chr7 22654955 C-A Hetero INTERGENIC
SBS Chr8 2009147 T-C Hetero INTERGENIC
SBS Chr8 2009148 C-A Hetero INTERGENIC
SBS Chr8 2009149 A-G Hetero INTERGENIC
SBS Chr8 7055537 T-C Hetero INTERGENIC
SBS Chr9 5469523 T-C Hetero INTERGENIC
SBS Chr9 6168090 G-A Hetero INTERGENIC
SBS Chr9 17065838 T-A Homo INTERGENIC
SBS Chr10 3442732 G-C Hetero INTERGENIC
SBS Chr10 6448574 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 9823224 A-G Hetero INTERGENIC
SBS Chr10 11042197 T-G Hetero INTERGENIC
SBS Chr10 18303047 G-A Homo INTERGENIC
SBS Chr10 20073032 G-A Hetero INTERGENIC
SBS Chr11 666369 C-T Hetero INTERGENIC
SBS Chr11 10441647 C-T Hetero INTERGENIC
SBS Chr11 10676038 G-C Hetero INTRON
SBS Chr11 16060289 G-A Hetero INTERGENIC
SBS Chr11 17238898 A-T Homo INTERGENIC
SBS Chr11 17238900 A-T Homo INTERGENIC
SBS Chr11 19491132 T-A Hetero INTERGENIC
SBS Chr11 24570860 T-C Homo INTERGENIC
SBS Chr11 26115392 T-A Homo INTERGENIC
SBS Chr12 1621018 C-T Homo SPLICE_SITE_REGION
SBS Chr12 5739930 A-G Hetero INTERGENIC
SBS Chr12 8315661 T-C Hetero INTERGENIC
SBS Chr12 23336723 G-A Hetero INTERGENIC
SBS Chr12 25022519 C-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 3127447 3127460 13
Deletion Chr5 3714656 3714658 2
Deletion Chr4 5632972 5632973 1
Deletion Chr2 8968563 8968566 3
Deletion Chr9 12741001 12760000 18999 OsKitaake09g084100
Deletion Chr10 14008478 14008498 20
Deletion Chr8 15897312 15897324 12
Deletion Chr5 18755197 18755222 25
Deletion Chr10 18822062 18822063 1
Deletion Chr8 21380683 21380700 17
Deletion Chr3 23356973 23356974 1
Deletion Chr2 30302531 30302532 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 484166 484168 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 3389050 3562266 2
Inversion Chr8 4547060 4807807 OsKitaake08g051200
Inversion Chr8 4547065 4813739 OsKitaake08g051200

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 495371 Chr3 19638186
Translocation Chr8 4807814 Chr2 15127638
Translocation Chr8 4813730 Chr2 15127638
Translocation Chr11 16539748 Chr2 3389044 OsKitaake02g048900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10071682	C-A	Hetero	INTERGENIC
SBS	Chr1	15608222	C-T	Homo	INTERGENIC
SBS	Chr1	30237458	G-T	Hetero	INTRON
SBS	Chr2	27022244	T-G	Homo	INTERGENIC
SBS	Chr2	31326136	A-G	Hetero	INTERGENIC
SBS	Chr3	13191865	C-A	Hetero	INTRON
SBS	Chr3	19182157	C-T	Hetero	INTERGENIC
SBS	Chr4	11238121	C-T	Homo	INTERGENIC
SBS	Chr4	16217350	G-T	Hetero	INTERGENIC
SBS	Chr4	18504104	G-A	Hetero	INTERGENIC
SBS	Chr4	21100002	A-T	Hetero	INTERGENIC
SBS	Chr4	32943643	A-T	Hetero	INTERGENIC
SBS	Chr4	33595077	C-A	Hetero	UTR_5_PRIME
SBS	Chr5	11505606	G-A	Hetero	INTERGENIC
SBS	Chr5	11505607	C-T	Hetero	INTERGENIC
SBS	Chr5	11505608	T-A	Hetero	INTERGENIC
SBS	Chr5	16615097	T-C	Hetero	INTERGENIC
SBS	Chr5	27039792	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g242400
SBS	Chr6	29137798	A-G	Hetero	INTRON
SBS	Chr7	10478687	C-A	Hetero	INTERGENIC
SBS	Chr7	22654955	C-A	Hetero	INTERGENIC
SBS	Chr8	2009147	T-C	Hetero	INTERGENIC
SBS	Chr8	2009148	C-A	Hetero	INTERGENIC
SBS	Chr8	2009149	A-G	Hetero	INTERGENIC
SBS	Chr8	7055537	T-C	Hetero	INTERGENIC
SBS	Chr9	5469523	T-C	Hetero	INTERGENIC
SBS	Chr9	6168090	G-A	Hetero	INTERGENIC
SBS	Chr9	17065838	T-A	Homo	INTERGENIC
SBS	Chr10	3442732	G-C	Hetero	INTERGENIC
SBS	Chr10	6448574	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	9823224	A-G	Hetero	INTERGENIC
SBS	Chr10	11042197	T-G	Hetero	INTERGENIC
SBS	Chr10	18303047	G-A	Homo	INTERGENIC
SBS	Chr10	20073032	G-A	Hetero	INTERGENIC
SBS	Chr11	666369	C-T	Hetero	INTERGENIC
SBS	Chr11	10441647	C-T	Hetero	INTERGENIC
SBS	Chr11	10676038	G-C	Hetero	INTRON
SBS	Chr11	16060289	G-A	Hetero	INTERGENIC
SBS	Chr11	17238898	A-T	Homo	INTERGENIC
SBS	Chr11	17238900	A-T	Homo	INTERGENIC
SBS	Chr11	19491132	T-A	Hetero	INTERGENIC
SBS	Chr11	24570860	T-C	Homo	INTERGENIC
SBS	Chr11	26115392	T-A	Homo	INTERGENIC
SBS	Chr12	1621018	C-T	Homo	SPLICE_SITE_REGION
SBS	Chr12	5739930	A-G	Hetero	INTERGENIC
SBS	Chr12	8315661	T-C	Hetero	INTERGENIC
SBS	Chr12	23336723	G-A	Hetero	INTERGENIC
SBS	Chr12	25022519	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	3127447	3127460	13
Deletion	Chr5	3714656	3714658	2
Deletion	Chr4	5632972	5632973	1
Deletion	Chr2	8968563	8968566	3
Deletion	Chr9	12741001	12760000	18999	OsKitaake09g084100
Deletion	Chr10	14008478	14008498	20
Deletion	Chr8	15897312	15897324	12
Deletion	Chr5	18755197	18755222	25
Deletion	Chr10	18822062	18822063	1
Deletion	Chr8	21380683	21380700	17
Deletion	Chr3	23356973	23356974	1
Deletion	Chr2	30302531	30302532	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3389050	3562266	2
Inversion	Chr8	4547060	4807807	OsKitaake08g051200
Inversion	Chr8	4547065	4813739	OsKitaake08g051200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes