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Mutant Information

Mutant Name	FN2556-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2556-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2407439 A-G Homo INTERGENIC
SBS Chr1 2407440 G-A Homo INTERGENIC
SBS Chr1 8371629 G-A Hetero INTRON
SBS Chr1 16435650 G-A Hetero INTERGENIC
SBS Chr1 16435651 T-A Hetero INTERGENIC
SBS Chr1 16435652 T-A Hetero INTERGENIC
SBS Chr1 29150474 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g283600
SBS Chr1 34467899 G-A Homo INTRON
SBS Chr2 10947257 G-A Hetero INTRON
SBS Chr2 12208690 C-T Hetero INTERGENIC
SBS Chr2 18893203 T-C Hetero INTERGENIC
SBS Chr2 21373499 C-A Hetero INTERGENIC
SBS Chr2 32541102 G-A Hetero INTERGENIC
SBS Chr3 8613244 G-T Hetero INTERGENIC
SBS Chr3 26949553 C-A Homo INTERGENIC
SBS Chr4 7399383 G-A Hetero INTERGENIC
SBS Chr4 7589873 C-A Hetero INTERGENIC
SBS Chr4 13017028 G-T Hetero INTERGENIC
SBS Chr4 22054092 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 23043425 C-T Hetero INTRON
SBS Chr6 13193031 C-T Hetero INTERGENIC
SBS Chr6 15607005 C-G Hetero INTERGENIC
SBS Chr6 19097523 G-A Hetero INTERGENIC
SBS Chr6 23809330 T-A Hetero INTRON
SBS Chr6 30271888 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g283900
SBS Chr7 258465 A-T Hetero INTERGENIC
SBS Chr7 9234347 A-T Homo INTERGENIC
SBS Chr7 10523528 G-A Homo INTERGENIC
SBS Chr7 13830168 T-C Homo INTERGENIC
SBS Chr7 20869168 C-T Homo INTERGENIC
SBS Chr7 23986934 C-T Homo INTERGENIC
SBS Chr8 6787245 T-G Hetero INTERGENIC
SBS Chr8 19217971 C-T Homo INTERGENIC
SBS Chr8 23392480 C-T Hetero INTRON
SBS Chr9 3017683 G-T Hetero INTERGENIC
SBS Chr10 1864473 C-T Homo INTRON
SBS Chr10 8410758 T-C Homo INTERGENIC
SBS Chr10 16745990 A-T Hetero UTR_5_PRIME
SBS Chr11 3990683 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g054600
SBS Chr12 4632260 G-C Hetero INTERGENIC
SBS Chr12 7791670 G-A Hetero INTERGENIC
SBS Chr12 10027465 C-T Hetero INTRON
SBS Chr12 12565007 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1371001 1381000 9999 OsKitaake05g017100
Deletion Chr1 1638330 1638334 4
Deletion Chr1 2216048 2216054 6
Deletion Chr2 7558980 7558987 7
Deletion Chr3 12435631 12435637 6
Deletion Chr8 15680488 15680507 19
Deletion Chr9 18055610 18055614 4
Deletion Chr4 20824500 20824503 3
Deletion Chr10 23643939 23643943 4
Deletion Chr6 24032483 24032485 2
Deletion Chr6 26274310 26274327 17
Deletion Chr3 34801004 34801005 1 OsKitaake03g379300
Deletion Chr1 39786070 39786071 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36422518 36422522 3
Insertion Chr3 25232891 25232895 3
Insertion Chr3 28982592 28982595 2
Insertion Chr5 2251060 2251063 2
Insertion Chr9 18566506 18566509 2
Insertion Chr11 24049691 24049695 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 22760573 23058819 OsKitaake08g177000

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 12526381 Chr4 10451596
Translocation Chr10 12918506 Chr8 22760570
Translocation Chr10 12918640 Chr8 23058817 OsKitaake08g177000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2407439	A-G	Homo	INTERGENIC
SBS	Chr1	2407440	G-A	Homo	INTERGENIC
SBS	Chr1	8371629	G-A	Hetero	INTRON
SBS	Chr1	16435650	G-A	Hetero	INTERGENIC
SBS	Chr1	16435651	T-A	Hetero	INTERGENIC
SBS	Chr1	16435652	T-A	Hetero	INTERGENIC
SBS	Chr1	29150474	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g283600
SBS	Chr1	34467899	G-A	Homo	INTRON
SBS	Chr2	10947257	G-A	Hetero	INTRON
SBS	Chr2	12208690	C-T	Hetero	INTERGENIC
SBS	Chr2	18893203	T-C	Hetero	INTERGENIC
SBS	Chr2	21373499	C-A	Hetero	INTERGENIC
SBS	Chr2	32541102	G-A	Hetero	INTERGENIC
SBS	Chr3	8613244	G-T	Hetero	INTERGENIC
SBS	Chr3	26949553	C-A	Homo	INTERGENIC
SBS	Chr4	7399383	G-A	Hetero	INTERGENIC
SBS	Chr4	7589873	C-A	Hetero	INTERGENIC
SBS	Chr4	13017028	G-T	Hetero	INTERGENIC
SBS	Chr4	22054092	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	23043425	C-T	Hetero	INTRON
SBS	Chr6	13193031	C-T	Hetero	INTERGENIC
SBS	Chr6	15607005	C-G	Hetero	INTERGENIC
SBS	Chr6	19097523	G-A	Hetero	INTERGENIC
SBS	Chr6	23809330	T-A	Hetero	INTRON
SBS	Chr6	30271888	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g283900
SBS	Chr7	258465	A-T	Hetero	INTERGENIC
SBS	Chr7	9234347	A-T	Homo	INTERGENIC
SBS	Chr7	10523528	G-A	Homo	INTERGENIC
SBS	Chr7	13830168	T-C	Homo	INTERGENIC
SBS	Chr7	20869168	C-T	Homo	INTERGENIC
SBS	Chr7	23986934	C-T	Homo	INTERGENIC
SBS	Chr8	6787245	T-G	Hetero	INTERGENIC
SBS	Chr8	19217971	C-T	Homo	INTERGENIC
SBS	Chr8	23392480	C-T	Hetero	INTRON
SBS	Chr9	3017683	G-T	Hetero	INTERGENIC
SBS	Chr10	1864473	C-T	Homo	INTRON
SBS	Chr10	8410758	T-C	Homo	INTERGENIC
SBS	Chr10	16745990	A-T	Hetero	UTR_5_PRIME
SBS	Chr11	3990683	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g054600
SBS	Chr12	4632260	G-C	Hetero	INTERGENIC
SBS	Chr12	7791670	G-A	Hetero	INTERGENIC
SBS	Chr12	10027465	C-T	Hetero	INTRON
SBS	Chr12	12565007	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1371001	1381000	9999	OsKitaake05g017100
Deletion	Chr1	1638330	1638334	4
Deletion	Chr1	2216048	2216054	6
Deletion	Chr2	7558980	7558987	7
Deletion	Chr3	12435631	12435637	6
Deletion	Chr8	15680488	15680507	19
Deletion	Chr9	18055610	18055614	4
Deletion	Chr4	20824500	20824503	3
Deletion	Chr10	23643939	23643943	4
Deletion	Chr6	24032483	24032485	2
Deletion	Chr6	26274310	26274327	17
Deletion	Chr3	34801004	34801005	1	OsKitaake03g379300
Deletion	Chr1	39786070	39786071	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	22760573	23058819	OsKitaake08g177000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes