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Mutant Information

Mutant Name	FN2557-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2557-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5125177 C-T Homo INTRON
SBS Chr1 26049203 G-T Hetero INTERGENIC
SBS Chr1 30381611 G-A Hetero INTERGENIC
SBS Chr2 545909 C-A Homo INTERGENIC
SBS Chr2 10767516 G-T Hetero INTERGENIC
SBS Chr2 17063973 A-G Hetero INTERGENIC
SBS Chr2 17063974 G-A Hetero INTERGENIC
SBS Chr2 18973783 C-T Hetero INTERGENIC
SBS Chr2 19027139 G-A Hetero INTERGENIC
SBS Chr2 20787352 C-A Hetero INTERGENIC
SBS Chr2 21662479 A-G Homo INTERGENIC
SBS Chr2 35525285 A-G Hetero INTRON
SBS Chr3 8608948 T-A Hetero INTERGENIC
SBS Chr3 30322017 T-A Hetero INTERGENIC
SBS Chr4 13340167 A-G Homo NON_SYNONYMOUS_CODING OsKitaake04g063400
SBS Chr4 13483747 T-C Hetero SYNONYMOUS_CODING
SBS Chr5 6776754 C-T Homo UTR_3_PRIME
SBS Chr5 20723186 C-T Hetero INTERGENIC
SBS Chr5 24883587 T-C Homo INTRON
SBS Chr6 3837783 G-C Homo INTERGENIC
SBS Chr6 25130860 T-A Hetero INTERGENIC
SBS Chr6 25247766 G-A Hetero INTERGENIC
SBS Chr7 10010814 T-C Hetero INTERGENIC
SBS Chr7 16003773 G-A Hetero INTERGENIC
SBS Chr8 1220026 T-G Homo INTERGENIC
SBS Chr8 3984537 C-T Homo INTERGENIC
SBS Chr8 16532376 C-A Hetero INTERGENIC
SBS Chr8 19455978 C-G Hetero INTERGENIC
SBS Chr8 25114457 T-A Homo INTERGENIC
SBS Chr9 2280485 A-G Hetero UTR_3_PRIME
SBS Chr9 2871767 C-A Hetero INTERGENIC
SBS Chr10 5591169 A-C Homo INTERGENIC
SBS Chr10 14340782 G-C Homo INTERGENIC
SBS Chr11 2212716 A-G Homo INTERGENIC
SBS Chr12 10087677 C-T Hetero INTERGENIC
SBS Chr12 13015792 A-C Hetero INTERGENIC
SBS Chr12 23444626 G-C Homo INTRON
SBS Chr12 24638005 T-A Homo STOP_GAINED OsKitaake12g200000

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 995756 995759 3
Deletion Chr10 2161933 2161940 7
Deletion Chr10 4809592 4809594 2
Deletion Chr5 5199536 5199541 5
Deletion Chr10 12736217 12736219 2
Deletion Chr11 13701113 13701114 1
Deletion Chr5 17159114 17159116 2
Deletion Chr10 17960479 17960490 11
Deletion Chr5 24224016 24224024 8

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 17269472 17269475 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 28599237 28655591 2
Inversion Chr5 28599251 28655608 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8478043 Chr1 3101849

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5125177	C-T	Homo	INTRON
SBS	Chr1	26049203	G-T	Hetero	INTERGENIC
SBS	Chr1	30381611	G-A	Hetero	INTERGENIC
SBS	Chr2	545909	C-A	Homo	INTERGENIC
SBS	Chr2	10767516	G-T	Hetero	INTERGENIC
SBS	Chr2	17063973	A-G	Hetero	INTERGENIC
SBS	Chr2	17063974	G-A	Hetero	INTERGENIC
SBS	Chr2	18973783	C-T	Hetero	INTERGENIC
SBS	Chr2	19027139	G-A	Hetero	INTERGENIC
SBS	Chr2	20787352	C-A	Hetero	INTERGENIC
SBS	Chr2	21662479	A-G	Homo	INTERGENIC
SBS	Chr2	35525285	A-G	Hetero	INTRON
SBS	Chr3	8608948	T-A	Hetero	INTERGENIC
SBS	Chr3	30322017	T-A	Hetero	INTERGENIC
SBS	Chr4	13340167	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g063400
SBS	Chr4	13483747	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr5	6776754	C-T	Homo	UTR_3_PRIME
SBS	Chr5	20723186	C-T	Hetero	INTERGENIC
SBS	Chr5	24883587	T-C	Homo	INTRON
SBS	Chr6	3837783	G-C	Homo	INTERGENIC
SBS	Chr6	25130860	T-A	Hetero	INTERGENIC
SBS	Chr6	25247766	G-A	Hetero	INTERGENIC
SBS	Chr7	10010814	T-C	Hetero	INTERGENIC
SBS	Chr7	16003773	G-A	Hetero	INTERGENIC
SBS	Chr8	1220026	T-G	Homo	INTERGENIC
SBS	Chr8	3984537	C-T	Homo	INTERGENIC
SBS	Chr8	16532376	C-A	Hetero	INTERGENIC
SBS	Chr8	19455978	C-G	Hetero	INTERGENIC
SBS	Chr8	25114457	T-A	Homo	INTERGENIC
SBS	Chr9	2280485	A-G	Hetero	UTR_3_PRIME
SBS	Chr9	2871767	C-A	Hetero	INTERGENIC
SBS	Chr10	5591169	A-C	Homo	INTERGENIC
SBS	Chr10	14340782	G-C	Homo	INTERGENIC
SBS	Chr11	2212716	A-G	Homo	INTERGENIC
SBS	Chr12	10087677	C-T	Hetero	INTERGENIC
SBS	Chr12	13015792	A-C	Hetero	INTERGENIC
SBS	Chr12	23444626	G-C	Homo	INTRON
SBS	Chr12	24638005	T-A	Homo	STOP_GAINED	OsKitaake12g200000

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	995756	995759	3
Deletion	Chr10	2161933	2161940	7
Deletion	Chr10	4809592	4809594	2
Deletion	Chr5	5199536	5199541	5
Deletion	Chr10	12736217	12736219	2
Deletion	Chr11	13701113	13701114	1
Deletion	Chr5	17159114	17159116	2
Deletion	Chr10	17960479	17960490	11
Deletion	Chr5	24224016	24224024	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	28599237	28655591	2
Inversion	Chr5	28599251	28655608	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes