Search Kitaake

Mutant Information

Mutant Name	FN2558-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2558-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 68530 A-G Homo INTERGENIC
SBS Chr1 1738605 G-A Hetero INTERGENIC
SBS Chr1 24674939 C-T Hetero INTERGENIC
SBS Chr1 30303657 G-T Hetero UTR_3_PRIME
SBS Chr1 37186459 C-G Hetero INTERGENIC
SBS Chr2 4665465 G-C Hetero INTERGENIC
SBS Chr2 12562268 C-T Homo STOP_GAINED OsKitaake02g141100
SBS Chr2 24043822 C-G Hetero INTERGENIC
SBS Chr2 28634803 G-A Homo INTERGENIC
SBS Chr3 17497716 G-A Homo UTR_3_PRIME
SBS Chr3 18216930 C-T Hetero INTERGENIC
SBS Chr3 20670328 C-T Homo INTERGENIC
SBS Chr3 36665803 C-T Hetero INTERGENIC
SBS Chr4 28097376 G-A Hetero INTERGENIC
SBS Chr4 31229476 C-T Hetero INTERGENIC
SBS Chr4 31448655 G-A Hetero INTERGENIC
SBS Chr4 33701962 G-T Hetero INTRON
SBS Chr5 968891 C-A Hetero INTERGENIC
SBS Chr5 11496337 G-C Hetero INTERGENIC
SBS Chr5 11561523 C-G Homo INTERGENIC
SBS Chr5 12253828 T-C Homo INTERGENIC
SBS Chr5 12390949 C-T Homo INTERGENIC
SBS Chr5 16836349 G-A Hetero INTERGENIC
SBS Chr5 25633786 T-C Hetero INTERGENIC
SBS Chr5 26165562 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g231600
SBS Chr6 2157466 C-A Hetero INTERGENIC
SBS Chr6 5186289 A-T Homo INTERGENIC
SBS Chr6 11645021 G-C Hetero INTERGENIC
SBS Chr6 15894028 G-A Hetero INTERGENIC
SBS Chr6 25030998 C-A Homo INTERGENIC
SBS Chr7 4283447 C-T Hetero INTERGENIC
SBS Chr7 10627152 C-T Homo INTERGENIC
SBS Chr7 21943531 G-A Homo INTERGENIC
SBS Chr8 6592429 C-T Hetero INTERGENIC
SBS Chr8 15018108 G-T Hetero INTERGENIC
SBS Chr8 16340445 C-A Hetero INTERGENIC
SBS Chr8 27113405 T-C Hetero INTRON
SBS Chr9 4089512 C-T Homo INTERGENIC
SBS Chr9 4848727 C-T Homo INTERGENIC
SBS Chr9 5014392 G-A Homo INTERGENIC
SBS Chr9 8761307 G-A Hetero INTERGENIC
SBS Chr9 11054859 G-A Hetero INTERGENIC
SBS Chr10 431066 G-A Hetero INTERGENIC
SBS Chr10 9130185 C-T Hetero INTERGENIC
SBS Chr10 12766531 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g077900
SBS Chr10 15250726 C-T Hetero INTERGENIC
SBS Chr11 11818208 G-T Homo INTERGENIC
SBS Chr12 1821621 T-A Hetero INTERGENIC
SBS Chr12 17294264 G-T Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 250420 250425 5 OsKitaake04g001400
Deletion Chr4 721990 721996 6
Deletion Chr12 916366 916380 14 OsKitaake12g013200
Deletion Chr12 2082887 2082889 2
Deletion Chr6 2144194 2144196 2 OsKitaake06g027500
Deletion Chr3 5900001 6022000 121999 28
Deletion Chr5 6523806 6523807 1
Deletion Chr3 8681318 8681328 10
Deletion Chr11 9812731 9812738 7
Deletion Chr6 9897456 9897457 1
Deletion Chr10 11304266 11304273 7
Deletion Chr3 11941063 11941067 4
Deletion Chr2 12147479 12147480 1
Deletion Chr4 13381657 13381668 11
Deletion Chr6 18318702 18318704 2
Deletion Chr11 20269516 20269518 2
Deletion Chr5 21268486 21268496 10 OsKitaake05g171900
Deletion Chr6 21980279 21980285 6
Deletion Chr1 23195242 23195244 2 OsKitaake01g221800
Deletion Chr8 26413595 26413598 3
Deletion Chr2 35646001 35782000 135999 15

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5552618 5552621 2
Insertion Chr10 2182883 2182888 4
Insertion Chr3 29711027 29711030 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 29501494 29538101

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 18847577 Chr3 29501578
Translocation Chr11 18887334 Chr3 29538105

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	68530	A-G	Homo	INTERGENIC
SBS	Chr1	1738605	G-A	Hetero	INTERGENIC
SBS	Chr1	24674939	C-T	Hetero	INTERGENIC
SBS	Chr1	30303657	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	37186459	C-G	Hetero	INTERGENIC
SBS	Chr2	4665465	G-C	Hetero	INTERGENIC
SBS	Chr2	12562268	C-T	Homo	STOP_GAINED	OsKitaake02g141100
SBS	Chr2	24043822	C-G	Hetero	INTERGENIC
SBS	Chr2	28634803	G-A	Homo	INTERGENIC
SBS	Chr3	17497716	G-A	Homo	UTR_3_PRIME
SBS	Chr3	18216930	C-T	Hetero	INTERGENIC
SBS	Chr3	20670328	C-T	Homo	INTERGENIC
SBS	Chr3	36665803	C-T	Hetero	INTERGENIC
SBS	Chr4	28097376	G-A	Hetero	INTERGENIC
SBS	Chr4	31229476	C-T	Hetero	INTERGENIC
SBS	Chr4	31448655	G-A	Hetero	INTERGENIC
SBS	Chr4	33701962	G-T	Hetero	INTRON
SBS	Chr5	968891	C-A	Hetero	INTERGENIC
SBS	Chr5	11496337	G-C	Hetero	INTERGENIC
SBS	Chr5	11561523	C-G	Homo	INTERGENIC
SBS	Chr5	12253828	T-C	Homo	INTERGENIC
SBS	Chr5	12390949	C-T	Homo	INTERGENIC
SBS	Chr5	16836349	G-A	Hetero	INTERGENIC
SBS	Chr5	25633786	T-C	Hetero	INTERGENIC
SBS	Chr5	26165562	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g231600
SBS	Chr6	2157466	C-A	Hetero	INTERGENIC
SBS	Chr6	5186289	A-T	Homo	INTERGENIC
SBS	Chr6	11645021	G-C	Hetero	INTERGENIC
SBS	Chr6	15894028	G-A	Hetero	INTERGENIC
SBS	Chr6	25030998	C-A	Homo	INTERGENIC
SBS	Chr7	4283447	C-T	Hetero	INTERGENIC
SBS	Chr7	10627152	C-T	Homo	INTERGENIC
SBS	Chr7	21943531	G-A	Homo	INTERGENIC
SBS	Chr8	6592429	C-T	Hetero	INTERGENIC
SBS	Chr8	15018108	G-T	Hetero	INTERGENIC
SBS	Chr8	16340445	C-A	Hetero	INTERGENIC
SBS	Chr8	27113405	T-C	Hetero	INTRON
SBS	Chr9	4089512	C-T	Homo	INTERGENIC
SBS	Chr9	4848727	C-T	Homo	INTERGENIC
SBS	Chr9	5014392	G-A	Homo	INTERGENIC
SBS	Chr9	8761307	G-A	Hetero	INTERGENIC
SBS	Chr9	11054859	G-A	Hetero	INTERGENIC
SBS	Chr10	431066	G-A	Hetero	INTERGENIC
SBS	Chr10	9130185	C-T	Hetero	INTERGENIC
SBS	Chr10	12766531	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g077900
SBS	Chr10	15250726	C-T	Hetero	INTERGENIC
SBS	Chr11	11818208	G-T	Homo	INTERGENIC
SBS	Chr12	1821621	T-A	Hetero	INTERGENIC
SBS	Chr12	17294264	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	250420	250425	5	OsKitaake04g001400
Deletion	Chr4	721990	721996	6
Deletion	Chr12	916366	916380	14	OsKitaake12g013200
Deletion	Chr12	2082887	2082889	2
Deletion	Chr6	2144194	2144196	2	OsKitaake06g027500
Deletion	Chr3	5900001	6022000	121999	28
Deletion	Chr5	6523806	6523807	1
Deletion	Chr3	8681318	8681328	10
Deletion	Chr11	9812731	9812738	7
Deletion	Chr6	9897456	9897457	1
Deletion	Chr10	11304266	11304273	7
Deletion	Chr3	11941063	11941067	4
Deletion	Chr2	12147479	12147480	1
Deletion	Chr4	13381657	13381668	11
Deletion	Chr6	18318702	18318704	2
Deletion	Chr11	20269516	20269518	2
Deletion	Chr5	21268486	21268496	10	OsKitaake05g171900
Deletion	Chr6	21980279	21980285	6
Deletion	Chr1	23195242	23195244	2	OsKitaake01g221800
Deletion	Chr8	26413595	26413598	3
Deletion	Chr2	35646001	35782000	135999	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	29501494	29538101

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes