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| Mutant Information |
|---|
| Mutant Name | FN2559-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2559-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12871150 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 14700755 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g166300 |
| SBS | Chr1 | 15134469 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 15140223 | G-A | Homo | INTRON | |
| SBS | Chr1 | 16892319 | A-T | Homo | INTRON | |
| SBS | Chr1 | 42148883 | A-C | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 10214202 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 2307843 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 13409219 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 15648200 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 19188678 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1809034 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7550199 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8641878 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 19562054 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 22794961 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g136300 |
| SBS | Chr4 | 29142464 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31182230 | A-G | Homo | START_GAINED | |
| SBS | Chr5 | 16118201 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 27833388 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 2379688 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 4283103 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g059100 |
| SBS | Chr6 | 12788803 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 3663158 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 12628614 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 14715119 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 24060895 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6781453 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 25717403 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2137826 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 11176868 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 14157448 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 17695230 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 16246809 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18734320 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 26469594 | G-A | Hetero | INTERGENIC |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 5532166 | 5532210 | 44 | |
| Deletion | Chr4 | 13545001 | 13833000 | 287999 | 14 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 774686 | 774691 | 4 | |
| Insertion | Chr5 | 30243939 | 30243941 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 13544204 | 14024418 | |
| Inversion | Chr4 | 13833005 | 14024437 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 25012226 | Chr5 | 626600 | OsKitaake08g194188 |
| Translocation | Chr11 | 25198642 | Chr10 | 12925356 | |
| Translocation | Chr6 | 27099958 | Chr1 | 392688 | OsKitaake01g005400 |
| Translocation | Chr6 | 27100176 | Chr1 | 392686 | OsKitaake01g005400 |