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| Mutant Information |
|---|
| Mutant Name | FN2560-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2560-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9470095 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 40483312 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 12006853 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 23482258 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 26288152 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31021268 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 32492435 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 3721502 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7431720 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15120292 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 163576 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 28676113 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 29672487 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 34420730 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g286300 |
| SBS | Chr5 | 6435783 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 16040303 | T-G | Hetero | INTRON | |
| SBS | Chr6 | 24869911 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 7996329 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12051392 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 17802850 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7755471 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9977516 | T-C | Homo | INTRON | |
| SBS | Chr8 | 10087866 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 15801726 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17654682 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19569919 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 26470172 | C-G | Hetero | INTRON | |
| SBS | Chr9 | 6877276 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13566602 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15071834 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 22702946 | A-T | Hetero | INTRON | |
| SBS | Chr10 | 91245 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5455994 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 5462478 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 26765522 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 1206966 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6210310 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11788339 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 14071786 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 22691645 | C-T | Hetero | INTERGENIC |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 1181384 | 1181385 | 1 | |
| Deletion | Chr10 | 4231436 | 4231562 | 126 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 3416809 | 3416812 | 2 | |
| Insertion | Chr8 | 26682322 | 26682325 | 2 | |
| Insertion | Chr7 | 12005937 | 12005940 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 25711389 | 25956434 |
Translocations: 8
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 274834 | Chr7 | 370695 | OsKitaake11g002200 |
| Translocation | Chr11 | 274847 | Chr7 | 370677 | OsKitaake11g002200 |
| Translocation | Chr6 | 3338013 | Chr3 | 22806055 | |
| Translocation | Chr6 | 3338015 | Chr3 | 22805095 | |
| Translocation | Chr11 | 3899660 | Chr6 | 1585732 | OsKitaake06g018800 |
| Translocation | Chr11 | 4213665 | Chr4 | 22380400 | OsKitaake04g131100 |
| Translocation | Chr10 | 17012891 | Chr4 | 6460646 | |
| Translocation | Chr11 | 22490266 | Chr1 | 3150069 |