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| Mutant Information |
|---|
| Mutant Name | FN2561-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2561-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12231903 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 1139648 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 11014538 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20437301 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 3911021 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 14961079 | C-T | Homo | INTRON | |
| SBS | Chr3 | 33529961 | G-C | Homo | INTRON | |
| SBS | Chr4 | 15997627 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 18773472 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 28321567 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 28698653 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 59603 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 20202987 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 6693229 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 12830021 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 786726 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 10146053 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 16680665 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10016321 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14547641 | C-G | Homo | INTRON | |
| SBS | Chr12 | 9604989 | C-A | Hetero | INTERGENIC |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 11746001 | 11864000 | 117999 | 3 |
| Deletion | Chr11 | 17662001 | 17720000 | 57999 | 5 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 30445616 | 30445621 | 4 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 6653842 | 6665280 |
Translocations: 7
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 1327623 | Chr4 | 28323601 | |
| Translocation | Chr10 | 1327885 | Chr8 | 10578803 | |
| Translocation | Chr10 | 1330666 | Chr8 | 11627030 | |
| Translocation | Chr7 | 15054091 | Chr6 | 12277150 | |
| Translocation | Chr5 | 16726738 | Chr2 | 7611544 | |
| Translocation | Chr8 | 20936422 | Chr6 | 8770781 | |
| Translocation | Chr11 | 24549813 | Chr7 | 21000136 | OsKitaake11g198000 |