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Mutant Information

Mutant Name	FN2562-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2562-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4804141 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 9790648 C-G Homo INTRON
SBS Chr1 40576747 G-A Hetero UTR_3_PRIME
SBS Chr2 8247194 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g105100
SBS Chr2 24779702 T-C Hetero INTERGENIC
SBS Chr2 34580911 G-A Hetero INTERGENIC
SBS Chr3 15739198 C-T Homo INTERGENIC
SBS Chr3 17751239 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g217800
SBS Chr3 22844555 A-T Hetero INTERGENIC
SBS Chr3 26290572 A-G Hetero INTERGENIC
SBS Chr3 26864830 C-T Hetero INTERGENIC
SBS Chr3 27990587 C-T Hetero INTERGENIC
SBS Chr4 15315393 T-C Hetero INTERGENIC
SBS Chr5 15986871 C-T Hetero INTERGENIC
SBS Chr5 24379160 T-G Hetero INTERGENIC
SBS Chr6 1516474 A-G Homo INTRON
SBS Chr6 8288976 A-T Hetero INTRON
SBS Chr6 14284948 T-A Hetero INTERGENIC
SBS Chr6 16744259 T-C Hetero INTERGENIC
SBS Chr6 17840791 C-G Hetero INTERGENIC
SBS Chr6 21874126 T-C Hetero INTERGENIC
SBS Chr6 22264183 T-A Homo INTRON
SBS Chr7 6412205 A-G Hetero INTERGENIC
SBS Chr7 10188633 T-A Hetero INTERGENIC
SBS Chr8 16994690 C-T Hetero INTRON
SBS Chr8 16994691 C-T Hetero INTRON
SBS Chr8 16994692 A-G Hetero INTRON
SBS Chr8 19226416 G-T Hetero INTERGENIC
SBS Chr8 23848327 G-A Hetero INTERGENIC
SBS Chr8 24578123 T-C Hetero INTERGENIC
SBS Chr8 26812320 A-C Hetero INTRON
SBS Chr9 4576429 T-A Hetero INTERGENIC
SBS Chr9 16578100 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 17018669 C-T Hetero INTERGENIC
SBS Chr10 2371889 C-T Hetero INTERGENIC
SBS Chr10 10482337 T-C Homo INTRON
SBS Chr11 5001385 G-A Hetero INTERGENIC
SBS Chr11 8828676 G-A Hetero INTERGENIC
SBS Chr11 10517043 T-G Hetero SYNONYMOUS_CODING
SBS Chr11 19870768 A-G Hetero INTERGENIC
SBS Chr12 3334197 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g047400
SBS Chr12 16003716 T-A Hetero INTRON
SBS Chr12 20489747 C-G Hetero INTERGENIC
SBS Chr12 22532278 G-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 466984 467004 20
Deletion Chr10 1637424 1637432 8
Deletion Chr3 5146294 5146295 1
Deletion Chr8 8274102 8274108 6
Deletion Chr1 9532001 9543000 10999 2
Deletion Chr5 9614116 9614124 8
Deletion Chr9 13410960 13410965 5
Deletion Chr3 18204051 18204064 13
Deletion Chr3 18507580 18507594 14
Deletion Chr4 19640703 19640711 8
Deletion Chr7 20853902 20853903 1 OsKitaake07g172100
Deletion Chr7 20887966 20887972 6
Deletion Chr10 20926490 20926496 6
Deletion Chr5 21219240 21219245 5
Deletion Chr12 21362989 21362995 6
Deletion Chr12 22353571 22353575 4
Deletion Chr12 23053201 23053206 5
Deletion Chr7 26521001 26536000 14999 2
Deletion Chr6 30656289 30656290 1
Deletion Chr2 32511055 32511070 15

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 19697675 19697678 2
Insertion Chr1 38357882 38357886 3
Insertion Chr4 22685405 22685407 1 OsKitaake04g134700
Insertion Chr4 26781858 26781860 1
Insertion Chr7 17400373 17400376 2
Insertion Chr11 9618280 9618288 7

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 1515737 2426767 2
Inversion Chr6 1515741 2426785 2
Inversion Chr5 2603427 2674655
Inversion Chr11 19090365 19295928
Inversion Chr11 19295939 19372728 OsKitaake11g151000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 2431304 Chr1 14969780 OsKitaake05g027600
Translocation Chr5 2540430 Chr1 14969989

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4804141	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	9790648	C-G	Homo	INTRON
SBS	Chr1	40576747	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	8247194	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g105100
SBS	Chr2	24779702	T-C	Hetero	INTERGENIC
SBS	Chr2	34580911	G-A	Hetero	INTERGENIC
SBS	Chr3	15739198	C-T	Homo	INTERGENIC
SBS	Chr3	17751239	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g217800
SBS	Chr3	22844555	A-T	Hetero	INTERGENIC
SBS	Chr3	26290572	A-G	Hetero	INTERGENIC
SBS	Chr3	26864830	C-T	Hetero	INTERGENIC
SBS	Chr3	27990587	C-T	Hetero	INTERGENIC
SBS	Chr4	15315393	T-C	Hetero	INTERGENIC
SBS	Chr5	15986871	C-T	Hetero	INTERGENIC
SBS	Chr5	24379160	T-G	Hetero	INTERGENIC
SBS	Chr6	1516474	A-G	Homo	INTRON
SBS	Chr6	8288976	A-T	Hetero	INTRON
SBS	Chr6	14284948	T-A	Hetero	INTERGENIC
SBS	Chr6	16744259	T-C	Hetero	INTERGENIC
SBS	Chr6	17840791	C-G	Hetero	INTERGENIC
SBS	Chr6	21874126	T-C	Hetero	INTERGENIC
SBS	Chr6	22264183	T-A	Homo	INTRON
SBS	Chr7	6412205	A-G	Hetero	INTERGENIC
SBS	Chr7	10188633	T-A	Hetero	INTERGENIC
SBS	Chr8	16994690	C-T	Hetero	INTRON
SBS	Chr8	16994691	C-T	Hetero	INTRON
SBS	Chr8	16994692	A-G	Hetero	INTRON
SBS	Chr8	19226416	G-T	Hetero	INTERGENIC
SBS	Chr8	23848327	G-A	Hetero	INTERGENIC
SBS	Chr8	24578123	T-C	Hetero	INTERGENIC
SBS	Chr8	26812320	A-C	Hetero	INTRON
SBS	Chr9	4576429	T-A	Hetero	INTERGENIC
SBS	Chr9	16578100	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	17018669	C-T	Hetero	INTERGENIC
SBS	Chr10	2371889	C-T	Hetero	INTERGENIC
SBS	Chr10	10482337	T-C	Homo	INTRON
SBS	Chr11	5001385	G-A	Hetero	INTERGENIC
SBS	Chr11	8828676	G-A	Hetero	INTERGENIC
SBS	Chr11	10517043	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	19870768	A-G	Hetero	INTERGENIC
SBS	Chr12	3334197	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g047400
SBS	Chr12	16003716	T-A	Hetero	INTRON
SBS	Chr12	20489747	C-G	Hetero	INTERGENIC
SBS	Chr12	22532278	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	466984	467004	20
Deletion	Chr10	1637424	1637432	8
Deletion	Chr3	5146294	5146295	1
Deletion	Chr8	8274102	8274108	6
Deletion	Chr1	9532001	9543000	10999	2
Deletion	Chr5	9614116	9614124	8
Deletion	Chr9	13410960	13410965	5
Deletion	Chr3	18204051	18204064	13
Deletion	Chr3	18507580	18507594	14
Deletion	Chr4	19640703	19640711	8
Deletion	Chr7	20853902	20853903	1	OsKitaake07g172100
Deletion	Chr7	20887966	20887972	6
Deletion	Chr10	20926490	20926496	6
Deletion	Chr5	21219240	21219245	5
Deletion	Chr12	21362989	21362995	6
Deletion	Chr12	22353571	22353575	4
Deletion	Chr12	23053201	23053206	5
Deletion	Chr7	26521001	26536000	14999	2
Deletion	Chr6	30656289	30656290	1
Deletion	Chr2	32511055	32511070	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1515737	2426767	2
Inversion	Chr6	1515741	2426785	2
Inversion	Chr5	2603427	2674655
Inversion	Chr11	19090365	19295928
Inversion	Chr11	19295939	19372728	OsKitaake11g151000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes