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| Mutant Information |
|---|
| Mutant Name | FN2563-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2563-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1694666 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 20515407 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 17841914 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 22975517 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 7464799 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 15502570 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15999832 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 24682506 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g263600 |
| SBS | Chr3 | 26548866 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 6802607 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 14582382 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 22584689 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 3045804 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 12578601 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 24814545 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 2163733 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 29211520 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8567970 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 8965278 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14986822 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 11132600 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17061472 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 17829525 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g133200 |
| SBS | Chr8 | 21640747 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4556911 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g025950 |
| SBS | Chr9 | 13061762 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 8295664 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 8295668 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 10163597 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 16538881 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14309751 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 22873283 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g181000 |
| SBS | Chr12 | 26393784 | G-A | Hetero | INTERGENIC |
Deletions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 6257001 | 6317000 | 59999 | 6 |
| Deletion | Chr10 | 19997426 | 19997427 | 1 | |
| Deletion | Chr3 | 37118001 | 37143000 | 24999 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 3027724 | 3027731 | 6 | |
| Insertion | Chr6 | 18549098 | 18549101 | 2 | |
| Insertion | Chr10 | 20264658 | 20264661 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 17169945 | 17302643 | |
| Inversion | Chr9 | 17169956 | 17302648 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 5070821 | Chr3 | 37141413 | OsKitaake03g415200 |
| Translocation | Chr4 | 5100323 | Chr3 | 37115469 | 2 |
| Translocation | Chr12 | 22409345 | Chr11 | 16692375 | OsKitaake11g132100 |
| Translocation | Chr11 | 25848454 | Chr2 | 18163871 |