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| Mutant Information |
|---|
| Mutant Name | FN2564-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2564-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3748499 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 16997437 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25895725 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 37842158 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9504230 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 17489329 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 17489330 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 17556019 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 25654483 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 34748504 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 1840184 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 28732644 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 33647672 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 34728524 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 1584532 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20880411 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 27492201 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 15775169 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 21014127 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 21030072 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26358740 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17277157 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 22985948 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23751430 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10170173 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 15457882 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18870699 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8145028 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 7418168 | A-T | Hetero | INTERGENIC |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 15554838 | 15554935 | 97 | |
| Deletion | Chr3 | 36371796 | 36371798 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 12028676 | 12028686 | 9 | |
| Insertion | Chr7 | 9047214 | 9047219 | 4 | |
| Insertion | Chr12 | 14662628 | 14662630 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 21944682 | 22376656 | OsKitaake07g189600 |
| Inversion | Chr7 | 21944688 | 22376675 | OsKitaake07g189600 |
Translocations: 11
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 591975 | Chr3 | 266826 | |
| Translocation | Chr7 | 4393738 | Chr3 | 10365911 | OsKitaake03g141500 |
| Translocation | Chr7 | 4395404 | Chr3 | 10365904 | OsKitaake03g141500 |
| Translocation | Chr7 | 4395415 | Chr6 | 17244755 | |
| Translocation | Chr7 | 4407311 | Chr6 | 17244745 | OsKitaake07g055300 |
| Translocation | Chr12 | 5440924 | Chr6 | 24294513 | |
| Translocation | Chr12 | 10320171 | Chr7 | 9815772 | |
| Translocation | Chr12 | 18853386 | Chr9 | 10074006 | OsKitaake09g061400 |
| Translocation | Chr3 | 19474197 | Chr2 | 32870798 | |
| Translocation | Chr8 | 20066489 | Chr1 | 16524363 | OsKitaake01g176800 |
| Translocation | Chr11 | 23375596 | Chr5 | 1847476 | OsKitaake11g186300 |