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Mutant Information

Mutant Name	FN2566-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2566-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18910221 C-T Homo INTERGENIC
SBS Chr1 19630491 C-T Hetero INTRON
SBS Chr1 21570030 G-T Hetero INTERGENIC
SBS Chr2 15229230 T-C Hetero START_GAINED
SBS Chr2 35915470 T-C Hetero INTERGENIC
SBS Chr4 2607893 C-A Hetero INTERGENIC
SBS Chr4 9181073 C-T Hetero INTERGENIC
SBS Chr5 9470919 A-G Homo INTERGENIC
SBS Chr5 23600003 T-A Hetero INTERGENIC
SBS Chr5 25442400 C-A Hetero SPLICE_SITE_DONOR OsKitaake05g222300
SBS Chr6 13953975 G-A Hetero INTERGENIC
SBS Chr7 5678002 G-A Hetero INTERGENIC
SBS Chr10 4686496 G-A Hetero INTERGENIC
SBS Chr10 9825670 T-A Hetero INTERGENIC
SBS Chr10 14956153 T-C Hetero INTERGENIC
SBS Chr10 21986933 C-T Hetero INTERGENIC
SBS Chr10 21986934 G-T Hetero INTERGENIC
SBS Chr11 9306790 A-T Hetero INTRON
SBS Chr11 29484374 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g242600
SBS Chr12 4092445 A-G Hetero UTR_3_PRIME

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 11921001 11940000 18999 3
Deletion Chr2 13825345 13825655 310
Deletion Chr4 15080604 15080609 5
Deletion Chr10 21376001 21861000 484999 78
Deletion Chr1 41148124 41148126 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31785678 31785681 2
Insertion Chr6 24767860 24767863 2
Insertion Chr5 30215229 30215231 1

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 170275 269755
Inversion Chr7 170327 269761
Inversion Chr5 11920785 12131436
Inversion Chr5 11938413 12131443
Inversion Chr9 21070424 21153510 OsKitaake09g182900
Inversion Chr9 21070430 21153510 OsKitaake09g182900
Inversion Chr10 21373697 21422756 OsKitaake10g168700
Inversion Chr10 21420025 21865388
Inversion Chr3 35691201 35794439
Inversion Chr3 35691206 35794450

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 7957711 Chr3 90452 2
Translocation Chr7 10675489 Chr2 5490826 OsKitaake07g101900
Translocation Chr7 10675501 Chr2 5490614 OsKitaake07g101900
Translocation Chr8 16652171 Chr5 4613981
Translocation Chr10 19047679 Chr2 4243970 OsKitaake02g060000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18910221	C-T	Homo	INTERGENIC
SBS	Chr1	19630491	C-T	Hetero	INTRON
SBS	Chr1	21570030	G-T	Hetero	INTERGENIC
SBS	Chr2	15229230	T-C	Hetero	START_GAINED
SBS	Chr2	35915470	T-C	Hetero	INTERGENIC
SBS	Chr4	2607893	C-A	Hetero	INTERGENIC
SBS	Chr4	9181073	C-T	Hetero	INTERGENIC
SBS	Chr5	9470919	A-G	Homo	INTERGENIC
SBS	Chr5	23600003	T-A	Hetero	INTERGENIC
SBS	Chr5	25442400	C-A	Hetero	SPLICE_SITE_DONOR	OsKitaake05g222300
SBS	Chr6	13953975	G-A	Hetero	INTERGENIC
SBS	Chr7	5678002	G-A	Hetero	INTERGENIC
SBS	Chr10	4686496	G-A	Hetero	INTERGENIC
SBS	Chr10	9825670	T-A	Hetero	INTERGENIC
SBS	Chr10	14956153	T-C	Hetero	INTERGENIC
SBS	Chr10	21986933	C-T	Hetero	INTERGENIC
SBS	Chr10	21986934	G-T	Hetero	INTERGENIC
SBS	Chr11	9306790	A-T	Hetero	INTRON
SBS	Chr11	29484374	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g242600
SBS	Chr12	4092445	A-G	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	11921001	11940000	18999	3
Deletion	Chr2	13825345	13825655	310
Deletion	Chr4	15080604	15080609	5
Deletion	Chr10	21376001	21861000	484999	78
Deletion	Chr1	41148124	41148126	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	170275	269755
Inversion	Chr7	170327	269761
Inversion	Chr5	11920785	12131436
Inversion	Chr5	11938413	12131443
Inversion	Chr9	21070424	21153510	OsKitaake09g182900
Inversion	Chr9	21070430	21153510	OsKitaake09g182900
Inversion	Chr10	21373697	21422756	OsKitaake10g168700
Inversion	Chr10	21420025	21865388
Inversion	Chr3	35691201	35794439
Inversion	Chr3	35691206	35794450

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes