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| Mutant Information |
|---|
| Mutant Name | FN2568-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2568-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13393714 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 33778648 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 3537767 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31483088 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 36958223 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 14873377 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 14890274 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 22437823 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 25518321 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 37181896 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 37588777 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g422100 |
| SBS | Chr4 | 2847778 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5343575 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 5343577 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 21261617 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 26481073 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 32319202 | A-T | Homo | INTRON | |
| SBS | Chr7 | 26671631 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 3318561 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 22565183 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 2231192 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14336729 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 17742934 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 9910234 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 28532624 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g233800 |
| SBS | Chr11 | 28651404 | A-T | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 201379 | 201391 | 12 | |
| Deletion | Chr6 | 221413 | 221416 | 3 | OsKitaake06g001200 |
| Deletion | Chr4 | 12225267 | 12225273 | 6 | |
| Deletion | Chr6 | 15756872 | 15757027 | 155 | |
| Deletion | Chr9 | 16912451 | 16912520 | 69 | |
| Deletion | Chr2 | 31249459 | 31249466 | 7 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 22930835 | 22930838 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 10085542 | Chr8 | 12639463 | |
| Translocation | Chr11 | 26687551 | Chr6 | 22092049 | |
| Translocation | Chr11 | 29053203 | Chr9 | 21524468 | OsKitaake11g238000 |