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Mutant Information

Mutant Name	FN2572-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2572-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 118

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 649110 C-T Homo UTR_3_PRIME
SBS Chr1 704421 G-T Homo INTERGENIC
SBS Chr1 6098226 C-T Homo INTERGENIC
SBS Chr1 6478462 A-T Hetero INTERGENIC
SBS Chr1 10524532 A-G Hetero INTERGENIC
SBS Chr1 12092838 T-C Hetero INTERGENIC
SBS Chr1 29695516 T-C Homo INTERGENIC
SBS Chr1 36913784 A-G Hetero INTERGENIC
SBS Chr1 40099408 A-T Homo INTERGENIC
SBS Chr2 14338244 C-A Homo INTERGENIC
SBS Chr2 17937850 A-G Homo INTERGENIC
SBS Chr2 27741381 C-T Hetero INTERGENIC
SBS Chr2 32094193 A-G Hetero INTERGENIC
SBS Chr2 34343945 A-T Hetero INTERGENIC
SBS Chr3 10272481 T-A Homo INTERGENIC
SBS Chr3 28028607 C-T Hetero INTERGENIC
SBS Chr3 35177160 G-A Homo NON_SYNONYMOUS_CODING OsKitaake03g385200
SBS Chr4 13686043 C-T Homo INTERGENIC
SBS Chr4 22286192 G-C Hetero INTERGENIC
SBS Chr4 25470737 G-T Homo INTERGENIC
SBS Chr5 17550991 G-T Homo START_GAINED
SBS Chr5 18632603 G-A Homo INTERGENIC
SBS Chr5 24747027 T-A Homo UTR_3_PRIME
SBS Chr5 24946757 C-A Hetero INTERGENIC
SBS Chr6 10604072 A-T Homo NON_SYNONYMOUS_CODING OsKitaake06g119200
SBS Chr6 10816616 C-T Homo INTERGENIC
SBS Chr6 17837528 T-C Homo INTERGENIC
SBS Chr6 24768704 A-T Homo INTERGENIC
SBS Chr7 5239714 G-A Hetero INTERGENIC
SBS Chr7 8815571 C-G Homo INTERGENIC
SBS Chr7 9753559 C-T Homo INTERGENIC
SBS Chr7 13685535 C-T Hetero INTERGENIC
SBS Chr7 27585481 T-A Hetero INTRON
SBS Chr8 5149890 A-T Hetero INTERGENIC
SBS Chr8 9346721 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g085600
SBS Chr8 22283247 C-T Hetero INTERGENIC
SBS Chr9 16263 C-T Hetero INTERGENIC
SBS Chr9 1916071 C-A Homo INTERGENIC
SBS Chr9 1916077 C-A Homo INTERGENIC
SBS Chr9 4783705 A-G Homo INTERGENIC
SBS Chr9 13026152 C-T Homo INTERGENIC
SBS Chr10 3888619 A-G Hetero INTERGENIC
SBS Chr10 7350517 C-A Hetero INTRON
SBS Chr10 7878786 G-A Hetero INTERGENIC
SBS Chr10 11343978 A-T Hetero INTERGENIC
SBS Chr10 11344204 C-T Hetero INTERGENIC
SBS Chr10 18095432 C-G Homo INTERGENIC
SBS Chr10 18143453 G-A Homo INTERGENIC
SBS Chr10 20130937 A-C Homo SPLICE_SITE_REGION
SBS Chr11 493641 A-T Homo NON_SYNONYMOUS_CODING OsKitaake11g005300
SBS Chr11 9631296 G-A Hetero INTERGENIC
SBS Chr12 21382580 G-C Hetero INTERGENIC
SBS Chr1 6098226 C-T Homo INTERGENIC
SBS Chr1 13210795 G-A Hetero INTERGENIC
SBS Chr1 16076733 C-T Homo INTERGENIC
SBS Chr1 20772238 C-T Hetero INTERGENIC
SBS Chr1 22255292 T-C Hetero INTERGENIC
SBS Chr1 36913784 A-G Hetero INTERGENIC
SBS Chr1 38315222 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g408400
SBS Chr1 43784108 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g487700
SBS Chr1 43819757 A-G Hetero INTERGENIC
SBS Chr2 7844898 C-T Hetero INTERGENIC
SBS Chr2 14338244 C-A Hetero INTERGENIC
SBS Chr2 18253381 A-G Hetero INTERGENIC
SBS Chr2 30166761 C-T Hetero UTR_5_PRIME
SBS Chr2 32094193 A-G Hetero INTERGENIC
SBS Chr2 33158644 T-G Hetero INTERGENIC
SBS Chr2 34343945 A-T Hetero INTERGENIC
SBS Chr3 8595282 A-C Homo SPLICE_SITE_REGION
SBS Chr3 16022604 G-A Hetero INTERGENIC
SBS Chr3 20917881 C-A Hetero INTERGENIC
SBS Chr3 37243307 G-A Hetero INTERGENIC
SBS Chr4 874354 C-A Hetero INTERGENIC
SBS Chr4 19448780 G-A Hetero INTERGENIC
SBS Chr4 32940922 T-C Hetero INTERGENIC
SBS Chr5 3067312 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g036400
SBS Chr5 8208242 T-G Hetero INTERGENIC
SBS Chr5 8208245 T-G Hetero INTERGENIC
SBS Chr5 8280887 T-C Hetero INTRON
SBS Chr5 12192585 G-A Hetero INTERGENIC
SBS Chr5 14520636 A-C Hetero INTERGENIC
SBS Chr5 17550991 G-T Hetero START_GAINED
SBS Chr5 18632603 G-A Hetero INTERGENIC
SBS Chr5 24747027 T-A Hetero UTR_3_PRIME
SBS Chr5 26847654 A-G Hetero INTRON
SBS Chr5 28159898 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g260600
SBS Chr6 5463685 C-T Hetero INTERGENIC
SBS Chr6 10604072 A-T Homo NON_SYNONYMOUS_CODING OsKitaake06g119200
SBS Chr6 10816616 C-T Homo INTERGENIC
SBS Chr6 17837528 T-C Homo INTERGENIC
SBS Chr7 1972125 C-G Hetero INTERGENIC
SBS Chr7 8815571 C-G Homo INTERGENIC
SBS Chr7 9753559 C-T Homo INTERGENIC
SBS Chr7 12275853 C-A Hetero INTERGENIC
SBS Chr7 13685535 C-T Hetero INTERGENIC
SBS Chr7 19711158 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g161100
SBS Chr9 16263 C-T Hetero INTERGENIC
SBS Chr9 65036 C-T Hetero INTERGENIC
SBS Chr9 1916071 C-A Hetero INTERGENIC
SBS Chr9 1916077 C-A Hetero INTERGENIC
SBS Chr9 4783705 A-G Hetero INTERGENIC
SBS Chr9 4814441 T-C Hetero INTERGENIC
SBS Chr9 6302693 A-C Hetero INTERGENIC
SBS Chr9 13026152 C-T Hetero INTERGENIC
SBS Chr10 142762 G-C Hetero INTERGENIC
SBS Chr10 6603650 G-A Hetero INTERGENIC
SBS Chr10 7350517 C-A Hetero INTRON
SBS Chr10 7878786 G-A Hetero INTERGENIC
SBS Chr10 8052170 T-C Hetero INTERGENIC
SBS Chr10 10393650 C-G Hetero INTERGENIC
SBS Chr10 11343978 A-T Hetero INTERGENIC
SBS Chr10 11344204 C-T Hetero INTERGENIC
SBS Chr10 15399874 A-C Hetero INTERGENIC
SBS Chr10 18143453 G-A Hetero INTERGENIC
SBS Chr10 20130937 A-C Hetero SPLICE_SITE_REGION
SBS Chr11 9631296 G-A Hetero INTERGENIC
SBS Chr11 27151842 G-A Hetero INTERGENIC
SBS Chr12 10181054 T-G Hetero INTERGENIC

Deletions: 38

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 390547 390548 1
Deletion Chr11 859981 859987 6
Deletion Chr7 1001082 1001091 9
Deletion Chr1 1014520 1014521 1 2
Deletion Chr1 2099254 2099270 16
Deletion Chr3 2673194 2673205 11
Deletion Chr7 2908964 2908973 9
Deletion Chr11 4474515 4474544 29
Deletion Chr9 5015150 5015151 1
Deletion Chr5 5963687 5963698 11
Deletion Chr7 6741768 6741769 1
Deletion Chr2 8444318 8444331 13 2
Deletion Chr2 9183575 9183576 1
Deletion Chr2 10923692 10923702 10
Deletion Chr10 11180818 11180819 1
Deletion Chr8 11185507 11185509 2
Deletion Chr6 11556414 11556429 15 2
Deletion Chr10 12251054 12251055 1
Deletion Chr5 13645666 13645667 1 2
Deletion Chr6 13756249 13756255 6 2
Deletion Chr2 14330562 14330571 9 2
Deletion Chr12 15215016 15215020 4 2
Deletion Chr2 16991184 16991192 8 2
Deletion Chr2 17282819 17282828 9
Deletion Chr11 17962305 17962356 51
Deletion Chr8 20442581 20442585 4 2
Deletion Chr12 22120114 22120118 4 OsKitaake12g174200
Deletion Chr10 22362121 22362131 10 OsKitaake10g183500
Deletion Chr2 24412001 24424000 11999
Deletion Chr5 28733469 28733479 10
Deletion Chr1 31747194 31747200 6
Deletion Chr4 32521950 32521955 5 2
Deletion Chr4 32572768 32572803 35
Deletion Chr3 36528770 36528780 10
Deletion Chr1 36608287 36608305 18
Deletion Chr1 37076239 37076253 14
Deletion Chr1 39849643 39849644 1
Deletion Chr1 43131670 43131672 2

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15278316 15278319 2
Insertion Chr5 6508369 6508372 2
Insertion Chr5 15343938 15343940 1
Insertion Chr5 26040924 26040927 2
Insertion Chr12 9120657 9120660 2
Insertion Chr2 12974689 12974691 1
Insertion Chr2 18772532 18772535 2
Insertion Chr3 7585189 7585192 2
Insertion Chr12 23644469 23644472 2
Insertion Chr4 10143274 10143276 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 5526930 5537782 OsKitaake11g067600
Inversion Chr10 7086628 7389242
Inversion Chr10 7226403 7389264
Inversion Chr1 22124902 22253220 OsKitaake01g212700
Inversion Chr1 22124913 22253224 OsKitaake01g212700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 17545387 Chr7 25168324 OsKitaake07g226800
Translocation Chr9 17552163 Chr7 25168316 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	649110	C-T	Homo	UTR_3_PRIME
SBS	Chr1	704421	G-T	Homo	INTERGENIC
SBS	Chr1	6098226	C-T	Homo	INTERGENIC
SBS	Chr1	6478462	A-T	Hetero	INTERGENIC
SBS	Chr1	10524532	A-G	Hetero	INTERGENIC
SBS	Chr1	12092838	T-C	Hetero	INTERGENIC
SBS	Chr1	29695516	T-C	Homo	INTERGENIC
SBS	Chr1	36913784	A-G	Hetero	INTERGENIC
SBS	Chr1	40099408	A-T	Homo	INTERGENIC
SBS	Chr2	14338244	C-A	Homo	INTERGENIC
SBS	Chr2	17937850	A-G	Homo	INTERGENIC
SBS	Chr2	27741381	C-T	Hetero	INTERGENIC
SBS	Chr2	32094193	A-G	Hetero	INTERGENIC
SBS	Chr2	34343945	A-T	Hetero	INTERGENIC
SBS	Chr3	10272481	T-A	Homo	INTERGENIC
SBS	Chr3	28028607	C-T	Hetero	INTERGENIC
SBS	Chr3	35177160	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g385200
SBS	Chr4	13686043	C-T	Homo	INTERGENIC
SBS	Chr4	22286192	G-C	Hetero	INTERGENIC
SBS	Chr4	25470737	G-T	Homo	INTERGENIC
SBS	Chr5	17550991	G-T	Homo	START_GAINED
SBS	Chr5	18632603	G-A	Homo	INTERGENIC
SBS	Chr5	24747027	T-A	Homo	UTR_3_PRIME
SBS	Chr5	24946757	C-A	Hetero	INTERGENIC
SBS	Chr6	10604072	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g119200
SBS	Chr6	10816616	C-T	Homo	INTERGENIC
SBS	Chr6	17837528	T-C	Homo	INTERGENIC
SBS	Chr6	24768704	A-T	Homo	INTERGENIC
SBS	Chr7	5239714	G-A	Hetero	INTERGENIC
SBS	Chr7	8815571	C-G	Homo	INTERGENIC
SBS	Chr7	9753559	C-T	Homo	INTERGENIC
SBS	Chr7	13685535	C-T	Hetero	INTERGENIC
SBS	Chr7	27585481	T-A	Hetero	INTRON
SBS	Chr8	5149890	A-T	Hetero	INTERGENIC
SBS	Chr8	9346721	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g085600
SBS	Chr8	22283247	C-T	Hetero	INTERGENIC
SBS	Chr9	16263	C-T	Hetero	INTERGENIC
SBS	Chr9	1916071	C-A	Homo	INTERGENIC
SBS	Chr9	1916077	C-A	Homo	INTERGENIC
SBS	Chr9	4783705	A-G	Homo	INTERGENIC
SBS	Chr9	13026152	C-T	Homo	INTERGENIC
SBS	Chr10	3888619	A-G	Hetero	INTERGENIC
SBS	Chr10	7350517	C-A	Hetero	INTRON
SBS	Chr10	7878786	G-A	Hetero	INTERGENIC
SBS	Chr10	11343978	A-T	Hetero	INTERGENIC
SBS	Chr10	11344204	C-T	Hetero	INTERGENIC
SBS	Chr10	18095432	C-G	Homo	INTERGENIC
SBS	Chr10	18143453	G-A	Homo	INTERGENIC
SBS	Chr10	20130937	A-C	Homo	SPLICE_SITE_REGION
SBS	Chr11	493641	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g005300
SBS	Chr11	9631296	G-A	Hetero	INTERGENIC
SBS	Chr12	21382580	G-C	Hetero	INTERGENIC
SBS	Chr1	6098226	C-T	Homo	INTERGENIC
SBS	Chr1	13210795	G-A	Hetero	INTERGENIC
SBS	Chr1	16076733	C-T	Homo	INTERGENIC
SBS	Chr1	20772238	C-T	Hetero	INTERGENIC
SBS	Chr1	22255292	T-C	Hetero	INTERGENIC
SBS	Chr1	36913784	A-G	Hetero	INTERGENIC
SBS	Chr1	38315222	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g408400
SBS	Chr1	43784108	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g487700
SBS	Chr1	43819757	A-G	Hetero	INTERGENIC
SBS	Chr2	7844898	C-T	Hetero	INTERGENIC
SBS	Chr2	14338244	C-A	Hetero	INTERGENIC
SBS	Chr2	18253381	A-G	Hetero	INTERGENIC
SBS	Chr2	30166761	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	32094193	A-G	Hetero	INTERGENIC
SBS	Chr2	33158644	T-G	Hetero	INTERGENIC
SBS	Chr2	34343945	A-T	Hetero	INTERGENIC
SBS	Chr3	8595282	A-C	Homo	SPLICE_SITE_REGION
SBS	Chr3	16022604	G-A	Hetero	INTERGENIC
SBS	Chr3	20917881	C-A	Hetero	INTERGENIC
SBS	Chr3	37243307	G-A	Hetero	INTERGENIC
SBS	Chr4	874354	C-A	Hetero	INTERGENIC
SBS	Chr4	19448780	G-A	Hetero	INTERGENIC
SBS	Chr4	32940922	T-C	Hetero	INTERGENIC
SBS	Chr5	3067312	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g036400
SBS	Chr5	8208242	T-G	Hetero	INTERGENIC
SBS	Chr5	8208245	T-G	Hetero	INTERGENIC
SBS	Chr5	8280887	T-C	Hetero	INTRON
SBS	Chr5	12192585	G-A	Hetero	INTERGENIC
SBS	Chr5	14520636	A-C	Hetero	INTERGENIC
SBS	Chr5	17550991	G-T	Hetero	START_GAINED
SBS	Chr5	18632603	G-A	Hetero	INTERGENIC
SBS	Chr5	24747027	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	26847654	A-G	Hetero	INTRON
SBS	Chr5	28159898	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g260600
SBS	Chr6	5463685	C-T	Hetero	INTERGENIC
SBS	Chr6	10604072	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g119200
SBS	Chr6	10816616	C-T	Homo	INTERGENIC
SBS	Chr6	17837528	T-C	Homo	INTERGENIC
SBS	Chr7	1972125	C-G	Hetero	INTERGENIC
SBS	Chr7	8815571	C-G	Homo	INTERGENIC
SBS	Chr7	9753559	C-T	Homo	INTERGENIC
SBS	Chr7	12275853	C-A	Hetero	INTERGENIC
SBS	Chr7	13685535	C-T	Hetero	INTERGENIC
SBS	Chr7	19711158	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g161100
SBS	Chr9	16263	C-T	Hetero	INTERGENIC
SBS	Chr9	65036	C-T	Hetero	INTERGENIC
SBS	Chr9	1916071	C-A	Hetero	INTERGENIC
SBS	Chr9	1916077	C-A	Hetero	INTERGENIC
SBS	Chr9	4783705	A-G	Hetero	INTERGENIC
SBS	Chr9	4814441	T-C	Hetero	INTERGENIC
SBS	Chr9	6302693	A-C	Hetero	INTERGENIC
SBS	Chr9	13026152	C-T	Hetero	INTERGENIC
SBS	Chr10	142762	G-C	Hetero	INTERGENIC
SBS	Chr10	6603650	G-A	Hetero	INTERGENIC
SBS	Chr10	7350517	C-A	Hetero	INTRON
SBS	Chr10	7878786	G-A	Hetero	INTERGENIC
SBS	Chr10	8052170	T-C	Hetero	INTERGENIC
SBS	Chr10	10393650	C-G	Hetero	INTERGENIC
SBS	Chr10	11343978	A-T	Hetero	INTERGENIC
SBS	Chr10	11344204	C-T	Hetero	INTERGENIC
SBS	Chr10	15399874	A-C	Hetero	INTERGENIC
SBS	Chr10	18143453	G-A	Hetero	INTERGENIC
SBS	Chr10	20130937	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr11	9631296	G-A	Hetero	INTERGENIC
SBS	Chr11	27151842	G-A	Hetero	INTERGENIC
SBS	Chr12	10181054	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	390547	390548	1
Deletion	Chr11	859981	859987	6
Deletion	Chr7	1001082	1001091	9
Deletion	Chr1	1014520	1014521	1	2
Deletion	Chr1	2099254	2099270	16
Deletion	Chr3	2673194	2673205	11
Deletion	Chr7	2908964	2908973	9
Deletion	Chr11	4474515	4474544	29
Deletion	Chr9	5015150	5015151	1
Deletion	Chr5	5963687	5963698	11
Deletion	Chr7	6741768	6741769	1
Deletion	Chr2	8444318	8444331	13	2
Deletion	Chr2	9183575	9183576	1
Deletion	Chr2	10923692	10923702	10
Deletion	Chr10	11180818	11180819	1
Deletion	Chr8	11185507	11185509	2
Deletion	Chr6	11556414	11556429	15	2
Deletion	Chr10	12251054	12251055	1
Deletion	Chr5	13645666	13645667	1	2
Deletion	Chr6	13756249	13756255	6	2
Deletion	Chr2	14330562	14330571	9	2
Deletion	Chr12	15215016	15215020	4	2
Deletion	Chr2	16991184	16991192	8	2
Deletion	Chr2	17282819	17282828	9
Deletion	Chr11	17962305	17962356	51
Deletion	Chr8	20442581	20442585	4	2
Deletion	Chr12	22120114	22120118	4	OsKitaake12g174200
Deletion	Chr10	22362121	22362131	10	OsKitaake10g183500
Deletion	Chr2	24412001	24424000	11999
Deletion	Chr5	28733469	28733479	10
Deletion	Chr1	31747194	31747200	6
Deletion	Chr4	32521950	32521955	5	2
Deletion	Chr4	32572768	32572803	35
Deletion	Chr3	36528770	36528780	10
Deletion	Chr1	36608287	36608305	18
Deletion	Chr1	37076239	37076253	14
Deletion	Chr1	39849643	39849644	1
Deletion	Chr1	43131670	43131672	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5526930	5537782	OsKitaake11g067600
Inversion	Chr10	7086628	7389242
Inversion	Chr10	7226403	7389264
Inversion	Chr1	22124902	22253220	OsKitaake01g212700
Inversion	Chr1	22124913	22253224	OsKitaake01g212700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes