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| Mutant Information |
|---|
| Mutant Name | FN2573-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2573-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1125022 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g013200 |
| SBS | Chr1 | 4573688 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 15572392 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 24671074 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 34328295 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g353900 |
| SBS | Chr1 | 35709285 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 1244369 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 1244378 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 1692498 | A-C | Hetero | INTRON | |
| SBS | Chr2 | 1956515 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9883958 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 22206461 | C-T | Homo | INTRON | |
| SBS | Chr2 | 22539698 | G-C | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 32957952 | G-C | Homo | INTRON | |
| SBS | Chr2 | 36685743 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 2073520 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 8543602 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 10635822 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25675794 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 30523763 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 34001223 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14486618 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17509857 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 18533447 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 29030269 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 31474552 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 33687516 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 33687517 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6261401 | T-G | Homo | INTERGENIC | |
| SBS | Chr5 | 10978614 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7575917 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 19968455 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 24133818 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28640847 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1650977 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 2145132 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 3537247 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12181564 | G-A | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 19070987 | 19070993 | 6 | |
| Deletion | Chr2 | 19292001 | 19735000 | 442999 | 41 |
| Deletion | Chr5 | 21558319 | 21558323 | 4 | |
| Deletion | Chr3 | 24144153 | 24144155 | 2 | |
| Deletion | Chr11 | 24894058 | 24894064 | 6 | |
| Deletion | Chr6 | 26370631 | 26370633 | 2 | OsKitaake06g236600 |
| Deletion | Chr3 | 35659705 | 35659709 | 4 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 22306482 | Chr2 | 31053376 | OsKitaake05g182300 |
| Translocation | Chr5 | 22306491 | Chr2 | 31059069 | OsKitaake05g182300 |