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| Mutant Information |
|---|
| Mutant Name | FN2574-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2574-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4386712 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 17020748 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 27692897 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 33627879 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 8182747 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 18535553 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 19791059 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 27472223 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31275782 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 1051113 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g016200 |
| SBS | Chr3 | 7294045 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 3757494 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 30305883 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 30319097 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 24915828 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 26438091 | C-T | Homo | STOP_GAINED | OsKitaake05g234400 |
| SBS | Chr6 | 24968305 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26716614 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26835057 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21208534 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 407622 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 526479 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr8 | 9855787 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 23944258 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20293289 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g154300 |
| SBS | Chr10 | 22017429 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 17096925 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 17930896 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 23665330 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15617651 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 22932759 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 26781851 | T-A | Homo | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 52182 | 52184 | 2 | |
| Deletion | Chr4 | 2365483 | 2365485 | 2 | |
| Deletion | Chr7 | 15221001 | 15240000 | 18999 | OsKitaake07g127400 |
| Deletion | Chr5 | 30263532 | 30263887 | 355 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 23427951 | 23427954 | 2 | |
| Insertion | Chr4 | 10335753 | 10335755 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 9119609 | 9125307 | |
| Inversion | Chr12 | 9119613 | 9125313 |
Translocations: 10
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 9895777 | Chr7 | 8142432 | OsKitaake10g057800 |
| Translocation | Chr10 | 10455558 | Chr5 | 9268055 | |
| Translocation | Chr12 | 12312957 | Chr4 | 9723246 | |
| Translocation | Chr11 | 12526240 | Chr4 | 10424057 | |
| Translocation | Chr12 | 14656064 | Chr10 | 9638027 | |
| Translocation | Chr12 | 15833353 | Chr5 | 9468380 | |
| Translocation | Chr12 | 17229702 | Chr11 | 5591836 | |
| Translocation | Chr12 | 17674272 | Chr4 | 2138221 | OsKitaake04g013932 |
| Translocation | Chr12 | 21683091 | Chr2 | 10533696 | OsKitaake12g169900 |
| Translocation | Chr11 | 27907071 | Chr4 | 11181361 |