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Mutant Information

Mutant Name	FN2575-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2575-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10691083 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g132600
SBS Chr1 24077353 T-A Hetero INTERGENIC
SBS Chr1 34910253 G-A Hetero INTERGENIC
SBS Chr1 34910254 T-A Hetero INTERGENIC
SBS Chr2 19410753 T-G Hetero UTR_3_PRIME
SBS Chr3 647577 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 1622826 C-T Hetero INTRON
SBS Chr3 10101855 C-G Homo SYNONYMOUS_CODING
SBS Chr3 17187796 C-G Homo INTERGENIC
SBS Chr3 20598063 G-A Homo INTERGENIC
SBS Chr3 25666033 G-A Hetero INTERGENIC
SBS Chr3 26439763 G-A Homo INTERGENIC
SBS Chr4 8886798 A-C Hetero INTERGENIC
SBS Chr4 10308341 G-A Hetero INTERGENIC
SBS Chr4 32729443 C-T Hetero INTERGENIC
SBS Chr4 35622390 G-C Hetero INTERGENIC
SBS Chr5 5402793 T-A Hetero INTERGENIC
SBS Chr5 10216356 A-T Hetero INTERGENIC
SBS Chr5 13418232 A-G Hetero INTERGENIC
SBS Chr5 28582842 G-A Hetero INTERGENIC
SBS Chr5 30088349 G-A Hetero INTERGENIC
SBS Chr6 7086014 C-T Hetero INTERGENIC
SBS Chr6 7894538 G-A Hetero UTR_3_PRIME
SBS Chr6 17421894 C-T Homo INTERGENIC
SBS Chr6 19669053 G-A Hetero INTERGENIC
SBS Chr7 701190 C-A Hetero UTR_3_PRIME
SBS Chr7 6354112 G-A Homo INTERGENIC
SBS Chr7 6354113 G-A Homo INTERGENIC
SBS Chr7 17304233 A-T Hetero INTERGENIC
SBS Chr7 29434487 T-A Hetero INTERGENIC
SBS Chr8 3662983 T-C Hetero INTRON
SBS Chr8 6648895 T-C Hetero INTERGENIC
SBS Chr8 10016173 G-A Hetero INTERGENIC
SBS Chr9 9752161 C-T Homo INTRON
SBS Chr9 18208905 C-T Hetero INTRON
SBS Chr9 18208906 A-T Hetero INTRON
SBS Chr9 22345029 G-C Hetero INTRON
SBS Chr10 4577912 C-G Homo INTERGENIC
SBS Chr10 20320288 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g154700
SBS Chr10 22138843 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g180300
SBS Chr11 3673076 A-G Hetero INTERGENIC
SBS Chr11 20114264 T-A Hetero INTERGENIC
SBS Chr11 20114265 C-A Hetero INTERGENIC
SBS Chr12 10746294 C-T Homo INTERGENIC
SBS Chr12 22109331 T-C Hetero INTERGENIC
SBS Chr12 25919118 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g214200
SBS Chr12 26046537 T-C Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 31423 31431 8
Deletion Chr4 6509897 6509899 2
Deletion Chr8 7092398 7092413 15
Deletion Chr3 7197432 7197438 6
Deletion Chr3 7214297 7214299 2
Deletion Chr4 10020001 10136000 115999 5
Deletion Chr6 10348691 10348703 12 OsKitaake06g117200
Deletion Chr6 11053001 11099000 45999 3
Deletion Chr9 11539399 11539401 2
Deletion Chr1 17826655 17826656 1
Deletion Chr6 18937998 18938004 6
Deletion Chr11 20003744 20003752 8
Deletion Chr1 20190671 20190676 5
Deletion Chr5 20586795 20586813 18
Deletion Chr10 23886257 23886258 1
Deletion Chr5 24171578 24171582 4
Deletion Chr8 24175165 24175173 8
Deletion Chr12 24318192 24318193 1
Deletion Chr2 31004474 31004477 3
Deletion Chr1 42845544 42845557 13

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 785364 785367 2
Insertion Chr1 20781139 20781142 2
Insertion Chr2 4471064 4471067 2
Insertion Chr5 12990612 12990615 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 15656583 15799821
Inversion Chr7 15656588 15799821
Inversion Chr1 17971169 18527908 2
Inversion Chr1 17971180 18527908 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 10135750 Chr1 39482430 OsKitaake01g425800
Translocation Chr4 10136164 Chr1 39482433 OsKitaake01g425800
Translocation Chr9 22514305 Chr4 14674460 OsKitaake04g069800
Translocation Chr9 22514326 Chr4 14674383 OsKitaake04g069800
Translocation Chr11 28727872 Chr4 10135744

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10691083	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g132600
SBS	Chr1	24077353	T-A	Hetero	INTERGENIC
SBS	Chr1	34910253	G-A	Hetero	INTERGENIC
SBS	Chr1	34910254	T-A	Hetero	INTERGENIC
SBS	Chr2	19410753	T-G	Hetero	UTR_3_PRIME
SBS	Chr3	647577	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	1622826	C-T	Hetero	INTRON
SBS	Chr3	10101855	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr3	17187796	C-G	Homo	INTERGENIC
SBS	Chr3	20598063	G-A	Homo	INTERGENIC
SBS	Chr3	25666033	G-A	Hetero	INTERGENIC
SBS	Chr3	26439763	G-A	Homo	INTERGENIC
SBS	Chr4	8886798	A-C	Hetero	INTERGENIC
SBS	Chr4	10308341	G-A	Hetero	INTERGENIC
SBS	Chr4	32729443	C-T	Hetero	INTERGENIC
SBS	Chr4	35622390	G-C	Hetero	INTERGENIC
SBS	Chr5	5402793	T-A	Hetero	INTERGENIC
SBS	Chr5	10216356	A-T	Hetero	INTERGENIC
SBS	Chr5	13418232	A-G	Hetero	INTERGENIC
SBS	Chr5	28582842	G-A	Hetero	INTERGENIC
SBS	Chr5	30088349	G-A	Hetero	INTERGENIC
SBS	Chr6	7086014	C-T	Hetero	INTERGENIC
SBS	Chr6	7894538	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	17421894	C-T	Homo	INTERGENIC
SBS	Chr6	19669053	G-A	Hetero	INTERGENIC
SBS	Chr7	701190	C-A	Hetero	UTR_3_PRIME
SBS	Chr7	6354112	G-A	Homo	INTERGENIC
SBS	Chr7	6354113	G-A	Homo	INTERGENIC
SBS	Chr7	17304233	A-T	Hetero	INTERGENIC
SBS	Chr7	29434487	T-A	Hetero	INTERGENIC
SBS	Chr8	3662983	T-C	Hetero	INTRON
SBS	Chr8	6648895	T-C	Hetero	INTERGENIC
SBS	Chr8	10016173	G-A	Hetero	INTERGENIC
SBS	Chr9	9752161	C-T	Homo	INTRON
SBS	Chr9	18208905	C-T	Hetero	INTRON
SBS	Chr9	18208906	A-T	Hetero	INTRON
SBS	Chr9	22345029	G-C	Hetero	INTRON
SBS	Chr10	4577912	C-G	Homo	INTERGENIC
SBS	Chr10	20320288	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g154700
SBS	Chr10	22138843	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g180300
SBS	Chr11	3673076	A-G	Hetero	INTERGENIC
SBS	Chr11	20114264	T-A	Hetero	INTERGENIC
SBS	Chr11	20114265	C-A	Hetero	INTERGENIC
SBS	Chr12	10746294	C-T	Homo	INTERGENIC
SBS	Chr12	22109331	T-C	Hetero	INTERGENIC
SBS	Chr12	25919118	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g214200
SBS	Chr12	26046537	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	31423	31431	8
Deletion	Chr4	6509897	6509899	2
Deletion	Chr8	7092398	7092413	15
Deletion	Chr3	7197432	7197438	6
Deletion	Chr3	7214297	7214299	2
Deletion	Chr4	10020001	10136000	115999	5
Deletion	Chr6	10348691	10348703	12	OsKitaake06g117200
Deletion	Chr6	11053001	11099000	45999	3
Deletion	Chr9	11539399	11539401	2
Deletion	Chr1	17826655	17826656	1
Deletion	Chr6	18937998	18938004	6
Deletion	Chr11	20003744	20003752	8
Deletion	Chr1	20190671	20190676	5
Deletion	Chr5	20586795	20586813	18
Deletion	Chr10	23886257	23886258	1
Deletion	Chr5	24171578	24171582	4
Deletion	Chr8	24175165	24175173	8
Deletion	Chr12	24318192	24318193	1
Deletion	Chr2	31004474	31004477	3
Deletion	Chr1	42845544	42845557	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	15656583	15799821
Inversion	Chr7	15656588	15799821
Inversion	Chr1	17971169	18527908	2
Inversion	Chr1	17971180	18527908	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes