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Mutant Information

Mutant Name	FN2577-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2577-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 62

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1631141 C-T Hetero INTRON
SBS Chr1 2078768 C-A Hetero UTR_5_PRIME
SBS Chr1 15752734 C-T Hetero INTERGENIC
SBS Chr1 18247927 T-A Hetero INTERGENIC
SBS Chr1 41375053 T-C Hetero INTERGENIC
SBS Chr2 8417019 A-G Hetero INTRON
SBS Chr2 11753084 G-A Hetero INTERGENIC
SBS Chr2 23341494 A-C Hetero INTRON
SBS Chr2 24867427 A-T Hetero INTERGENIC
SBS Chr2 31483811 C-T Hetero INTERGENIC
SBS Chr2 37069662 C-A Homo INTERGENIC
SBS Chr3 10330335 T-A Hetero INTERGENIC
SBS Chr3 10556216 C-A Homo INTERGENIC
SBS Chr3 19867810 G-C Hetero INTERGENIC
SBS Chr3 21422306 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g236100
SBS Chr3 35302539 A-C Homo INTERGENIC
SBS Chr3 35302544 T-C Homo INTERGENIC
SBS Chr4 7090469 T-C Hetero INTERGENIC
SBS Chr4 9417798 G-A Homo INTERGENIC
SBS Chr4 16150931 A-T Hetero INTERGENIC
SBS Chr4 19597054 A-T Hetero INTRON
SBS Chr4 28880613 G-A Homo UTR_3_PRIME
SBS Chr5 3598396 G-T Hetero INTRON
SBS Chr5 5101273 A-G Hetero INTERGENIC
SBS Chr5 8872403 A-G Homo INTERGENIC
SBS Chr5 14802323 G-T Homo INTERGENIC
SBS Chr5 20039258 C-G Hetero UTR_3_PRIME
SBS Chr5 24275059 C-T Hetero INTRON
SBS Chr6 6833073 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g088500
SBS Chr6 7523495 G-T Hetero INTERGENIC
SBS Chr6 7612641 G-A Hetero INTERGENIC
SBS Chr6 11574324 C-T Hetero INTERGENIC
SBS Chr6 13149289 C-T Homo INTERGENIC
SBS Chr6 21793789 T-C Homo INTRON
SBS Chr6 22962155 C-G Hetero INTERGENIC
SBS Chr7 6024302 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g072500
SBS Chr7 6024303 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g072500
SBS Chr7 7756952 C-T Hetero INTERGENIC
SBS Chr7 12710093 A-T Hetero INTERGENIC
SBS Chr7 12710094 C-T Hetero INTERGENIC
SBS Chr7 13447379 C-T Hetero INTERGENIC
SBS Chr7 13834280 G-A Hetero INTERGENIC
SBS Chr7 19941745 A-T Hetero INTERGENIC
SBS Chr7 19942997 T-G Homo INTERGENIC
SBS Chr7 23728185 C-T Hetero INTERGENIC
SBS Chr8 1900087 G-T Homo INTERGENIC
SBS Chr8 3064850 G-C Hetero SPLICE_SITE_DONOR OsKitaake08g034100
SBS Chr8 10890457 T-G Hetero INTERGENIC
SBS Chr8 29111711 C-G Homo INTERGENIC
SBS Chr9 9369218 T-A Hetero INTRON
SBS Chr9 17462595 C-T Hetero INTERGENIC
SBS Chr9 18356243 C-G Hetero INTERGENIC
SBS Chr10 1081096 G-A Hetero INTERGENIC
SBS Chr10 7767603 G-A Hetero INTERGENIC
SBS Chr10 16880966 C-T Hetero INTERGENIC
SBS Chr10 22870832 G-A Hetero INTRON
SBS Chr11 19946736 T-G Homo INTRON
SBS Chr11 28795709 G-A Hetero INTRON
SBS Chr12 514642 G-A Homo INTERGENIC
SBS Chr12 15238112 T-C Homo INTERGENIC
SBS Chr12 16201525 A-G Homo INTERGENIC
SBS Chr12 23357750 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 6378295 6378296 1
Deletion Chr3 9067244 9067246 2
Deletion Chr2 10550300 10550302 2
Deletion Chr5 11976657 11976673 16
Deletion Chr12 12208768 12208774 6
Deletion Chr7 15165382 15165383 1
Deletion Chr12 15536425 15536436 11 OsKitaake12g120600
Deletion Chr12 20314444 20314490 46
Deletion Chr6 27542987 27542994 7
Deletion Chr7 27896054 27896058 4
Deletion Chr4 33167606 33167608 2
Deletion Chr4 35343001 35382000 38999 10

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 6205447 6205452 4
Insertion Chr10 9880646 9880649 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 19484279 20315855 OsKitaake01g194600
Inversion Chr1 19484285 20315862 OsKitaake01g194600

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 12450879 Chr2 6465845

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1631141	C-T	Hetero	INTRON
SBS	Chr1	2078768	C-A	Hetero	UTR_5_PRIME
SBS	Chr1	15752734	C-T	Hetero	INTERGENIC
SBS	Chr1	18247927	T-A	Hetero	INTERGENIC
SBS	Chr1	41375053	T-C	Hetero	INTERGENIC
SBS	Chr2	8417019	A-G	Hetero	INTRON
SBS	Chr2	11753084	G-A	Hetero	INTERGENIC
SBS	Chr2	23341494	A-C	Hetero	INTRON
SBS	Chr2	24867427	A-T	Hetero	INTERGENIC
SBS	Chr2	31483811	C-T	Hetero	INTERGENIC
SBS	Chr2	37069662	C-A	Homo	INTERGENIC
SBS	Chr3	10330335	T-A	Hetero	INTERGENIC
SBS	Chr3	10556216	C-A	Homo	INTERGENIC
SBS	Chr3	19867810	G-C	Hetero	INTERGENIC
SBS	Chr3	21422306	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g236100
SBS	Chr3	35302539	A-C	Homo	INTERGENIC
SBS	Chr3	35302544	T-C	Homo	INTERGENIC
SBS	Chr4	7090469	T-C	Hetero	INTERGENIC
SBS	Chr4	9417798	G-A	Homo	INTERGENIC
SBS	Chr4	16150931	A-T	Hetero	INTERGENIC
SBS	Chr4	19597054	A-T	Hetero	INTRON
SBS	Chr4	28880613	G-A	Homo	UTR_3_PRIME
SBS	Chr5	3598396	G-T	Hetero	INTRON
SBS	Chr5	5101273	A-G	Hetero	INTERGENIC
SBS	Chr5	8872403	A-G	Homo	INTERGENIC
SBS	Chr5	14802323	G-T	Homo	INTERGENIC
SBS	Chr5	20039258	C-G	Hetero	UTR_3_PRIME
SBS	Chr5	24275059	C-T	Hetero	INTRON
SBS	Chr6	6833073	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g088500
SBS	Chr6	7523495	G-T	Hetero	INTERGENIC
SBS	Chr6	7612641	G-A	Hetero	INTERGENIC
SBS	Chr6	11574324	C-T	Hetero	INTERGENIC
SBS	Chr6	13149289	C-T	Homo	INTERGENIC
SBS	Chr6	21793789	T-C	Homo	INTRON
SBS	Chr6	22962155	C-G	Hetero	INTERGENIC
SBS	Chr7	6024302	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g072500
SBS	Chr7	6024303	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g072500
SBS	Chr7	7756952	C-T	Hetero	INTERGENIC
SBS	Chr7	12710093	A-T	Hetero	INTERGENIC
SBS	Chr7	12710094	C-T	Hetero	INTERGENIC
SBS	Chr7	13447379	C-T	Hetero	INTERGENIC
SBS	Chr7	13834280	G-A	Hetero	INTERGENIC
SBS	Chr7	19941745	A-T	Hetero	INTERGENIC
SBS	Chr7	19942997	T-G	Homo	INTERGENIC
SBS	Chr7	23728185	C-T	Hetero	INTERGENIC
SBS	Chr8	1900087	G-T	Homo	INTERGENIC
SBS	Chr8	3064850	G-C	Hetero	SPLICE_SITE_DONOR	OsKitaake08g034100
SBS	Chr8	10890457	T-G	Hetero	INTERGENIC
SBS	Chr8	29111711	C-G	Homo	INTERGENIC
SBS	Chr9	9369218	T-A	Hetero	INTRON
SBS	Chr9	17462595	C-T	Hetero	INTERGENIC
SBS	Chr9	18356243	C-G	Hetero	INTERGENIC
SBS	Chr10	1081096	G-A	Hetero	INTERGENIC
SBS	Chr10	7767603	G-A	Hetero	INTERGENIC
SBS	Chr10	16880966	C-T	Hetero	INTERGENIC
SBS	Chr10	22870832	G-A	Hetero	INTRON
SBS	Chr11	19946736	T-G	Homo	INTRON
SBS	Chr11	28795709	G-A	Hetero	INTRON
SBS	Chr12	514642	G-A	Homo	INTERGENIC
SBS	Chr12	15238112	T-C	Homo	INTERGENIC
SBS	Chr12	16201525	A-G	Homo	INTERGENIC
SBS	Chr12	23357750	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	6378295	6378296	1
Deletion	Chr3	9067244	9067246	2
Deletion	Chr2	10550300	10550302	2
Deletion	Chr5	11976657	11976673	16
Deletion	Chr12	12208768	12208774	6
Deletion	Chr7	15165382	15165383	1
Deletion	Chr12	15536425	15536436	11	OsKitaake12g120600
Deletion	Chr12	20314444	20314490	46
Deletion	Chr6	27542987	27542994	7
Deletion	Chr7	27896054	27896058	4
Deletion	Chr4	33167606	33167608	2
Deletion	Chr4	35343001	35382000	38999	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	19484279	20315855	OsKitaake01g194600
Inversion	Chr1	19484285	20315862	OsKitaake01g194600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes