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| Mutant Information |
|---|
| Mutant Name | FN2578-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2578-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6601570 | C-T | Homo | INTRON | |
| SBS | Chr1 | 6829802 | T-C | Homo | INTRON | |
| SBS | Chr1 | 14193924 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 29115373 | G-T | Hetero | INTRON | |
| SBS | Chr1 | 34634445 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 37880369 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 5693997 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18541405 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 27825502 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 13388730 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 13687806 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g181300 |
| SBS | Chr3 | 14018452 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19825563 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 20546414 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 19888027 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 19506873 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19915719 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 7765173 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 19504874 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 966291 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 11852401 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 22417390 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 877968 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13165178 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 23458664 | A-T | Homo | INTRON | |
| SBS | Chr11 | 29153342 | C-T | Hetero | SYNONYMOUS_CODING |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 6678597 | 6678600 | 3 | OsKitaake05g067200 |
| Deletion | Chr6 | 7027051 | 7027055 | 4 | |
| Deletion | Chr8 | 7322141 | 7322152 | 11 | |
| Deletion | Chr6 | 10896001 | 10927000 | 30999 | 3 |
| Deletion | Chr6 | 10929001 | 10967000 | 37999 | 3 |
| Deletion | Chr7 | 12340679 | 12340680 | 1 | |
| Deletion | Chr7 | 16178974 | 16178975 | 1 | |
| Deletion | Chr10 | 17671001 | 17791000 | 119999 | 16 |
| Deletion | Chr5 | 18019700 | 18019701 | 1 | |
| Deletion | Chr3 | 23784520 | 23784521 | 1 | |
| Deletion | Chr3 | 26309968 | 26309969 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 27717842 | 27717848 | 5 | |
| Insertion | Chr10 | 8751338 | 8751340 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 10741306 | 10896902 | |
| Inversion | Chr6 | 10741310 | 10967394 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 13280711 | Chr4 | 938133 | |
| Translocation | Chr5 | 24083353 | Chr4 | 6814928 |