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Mutant Information

Mutant Name	FN2579-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2579-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9671297 T-C Homo INTERGENIC
SBS Chr1 13337855 C-T Hetero INTERGENIC
SBS Chr1 14901036 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g142100
SBS Chr1 20428883 G-A Homo INTERGENIC
SBS Chr1 29364152 T-A Hetero INTERGENIC
SBS Chr1 34574764 A-C Hetero INTERGENIC
SBS Chr1 36416596 C-G Hetero INTERGENIC
SBS Chr1 39901194 A-G Hetero INTERGENIC
SBS Chr1 41075022 T-G Hetero INTERGENIC
SBS Chr2 2911274 A-T Hetero INTERGENIC
SBS Chr2 15539395 C-T Hetero INTERGENIC
SBS Chr2 19820097 T-C Hetero INTERGENIC
SBS Chr2 21797756 G-A Hetero INTERGENIC
SBS Chr3 239896 T-C Hetero INTERGENIC
SBS Chr3 24596880 C-G Hetero INTERGENIC
SBS Chr3 28770341 C-T Homo INTERGENIC
SBS Chr4 1881406 A-G Hetero INTERGENIC
SBS Chr4 7449265 A-G Hetero INTERGENIC
SBS Chr4 10027274 A-G Hetero INTERGENIC
SBS Chr4 11522276 A-G Homo INTERGENIC
SBS Chr4 26477375 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g190000
SBS Chr4 27738009 A-G Hetero INTERGENIC
SBS Chr4 34647645 A-G Hetero INTERGENIC
SBS Chr5 7257729 T-C Hetero INTERGENIC
SBS Chr5 10103813 G-A Homo INTRON
SBS Chr5 22380518 A-G Hetero INTERGENIC
SBS Chr5 28276836 G-T Hetero UTR_3_PRIME
SBS Chr5 28842727 G-C Homo INTRON
SBS Chr6 2301157 C-T Hetero INTRON
SBS Chr6 4043755 C-T Hetero UTR_3_PRIME
SBS Chr6 8514565 G-T Hetero INTRON
SBS Chr6 8514566 A-T Hetero INTRON
SBS Chr6 12652023 C-A Hetero INTERGENIC
SBS Chr6 14325427 G-T Hetero INTERGENIC
SBS Chr6 26197336 G-C Homo INTERGENIC
SBS Chr7 22225935 A-T Hetero INTERGENIC
SBS Chr7 23242258 T-C Hetero INTERGENIC
SBS Chr8 10889304 C-G Hetero INTERGENIC
SBS Chr8 25271376 C-A Homo INTERGENIC
SBS Chr9 5678411 C-T Hetero INTERGENIC
SBS Chr10 3672964 T-C Hetero INTERGENIC
SBS Chr10 7485649 G-A Hetero INTERGENIC
SBS Chr10 8409996 A-G Hetero INTERGENIC
SBS Chr10 19656734 C-A Hetero UTR_3_PRIME
SBS Chr11 7237432 C-T Hetero INTERGENIC
SBS Chr11 14122040 T-C Hetero INTERGENIC
SBS Chr11 15939031 G-A Homo UTR_3_PRIME
SBS Chr11 19609084 A-G Hetero INTERGENIC
SBS Chr11 21041843 C-A Hetero INTERGENIC
SBS Chr11 21082311 G-T Hetero INTERGENIC
SBS Chr12 8729125 G-A Hetero INTERGENIC
SBS Chr12 23715753 G-A Hetero INTERGENIC
SBS Chr12 26768392 G-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2224402 2224405 3
Deletion Chr3 3145972 3145973 1 OsKitaake03g044300
Deletion Chr9 5819297 5819309 12
Deletion Chr6 8808165 8808167 2
Deletion Chr8 10183246 10183249 3
Deletion Chr7 14163244 14163253 9
Deletion Chr2 14274227 14274229 2
Deletion Chr8 18350317 18350320 3
Deletion Chr12 18744207 18744210 3
Deletion Chr11 20421729 20421730 1
Deletion Chr5 21337001 21409000 71999 11
Deletion Chr11 26110366 26110367 1
Deletion Chr3 33831599 33831604 5
Deletion Chr1 38942722 38942730 8

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40484905 40484907 1
Insertion Chr1 41559537 41559540 2
Insertion Chr2 4815722 4815725 2
Insertion Chr4 26151787 26151790 2
Insertion Chr7 18907499 18907502 2
Insertion Chr10 14378527 14378531 3
Insertion Chr11 20352654 20352657 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 16624853 Chr7 28876360 2
Translocation Chr10 16624861 Chr7 28876351 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9671297	T-C	Homo	INTERGENIC
SBS	Chr1	13337855	C-T	Hetero	INTERGENIC
SBS	Chr1	14901036	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g142100
SBS	Chr1	20428883	G-A	Homo	INTERGENIC
SBS	Chr1	29364152	T-A	Hetero	INTERGENIC
SBS	Chr1	34574764	A-C	Hetero	INTERGENIC
SBS	Chr1	36416596	C-G	Hetero	INTERGENIC
SBS	Chr1	39901194	A-G	Hetero	INTERGENIC
SBS	Chr1	41075022	T-G	Hetero	INTERGENIC
SBS	Chr2	2911274	A-T	Hetero	INTERGENIC
SBS	Chr2	15539395	C-T	Hetero	INTERGENIC
SBS	Chr2	19820097	T-C	Hetero	INTERGENIC
SBS	Chr2	21797756	G-A	Hetero	INTERGENIC
SBS	Chr3	239896	T-C	Hetero	INTERGENIC
SBS	Chr3	24596880	C-G	Hetero	INTERGENIC
SBS	Chr3	28770341	C-T	Homo	INTERGENIC
SBS	Chr4	1881406	A-G	Hetero	INTERGENIC
SBS	Chr4	7449265	A-G	Hetero	INTERGENIC
SBS	Chr4	10027274	A-G	Hetero	INTERGENIC
SBS	Chr4	11522276	A-G	Homo	INTERGENIC
SBS	Chr4	26477375	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g190000
SBS	Chr4	27738009	A-G	Hetero	INTERGENIC
SBS	Chr4	34647645	A-G	Hetero	INTERGENIC
SBS	Chr5	7257729	T-C	Hetero	INTERGENIC
SBS	Chr5	10103813	G-A	Homo	INTRON
SBS	Chr5	22380518	A-G	Hetero	INTERGENIC
SBS	Chr5	28276836	G-T	Hetero	UTR_3_PRIME
SBS	Chr5	28842727	G-C	Homo	INTRON
SBS	Chr6	2301157	C-T	Hetero	INTRON
SBS	Chr6	4043755	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	8514565	G-T	Hetero	INTRON
SBS	Chr6	8514566	A-T	Hetero	INTRON
SBS	Chr6	12652023	C-A	Hetero	INTERGENIC
SBS	Chr6	14325427	G-T	Hetero	INTERGENIC
SBS	Chr6	26197336	G-C	Homo	INTERGENIC
SBS	Chr7	22225935	A-T	Hetero	INTERGENIC
SBS	Chr7	23242258	T-C	Hetero	INTERGENIC
SBS	Chr8	10889304	C-G	Hetero	INTERGENIC
SBS	Chr8	25271376	C-A	Homo	INTERGENIC
SBS	Chr9	5678411	C-T	Hetero	INTERGENIC
SBS	Chr10	3672964	T-C	Hetero	INTERGENIC
SBS	Chr10	7485649	G-A	Hetero	INTERGENIC
SBS	Chr10	8409996	A-G	Hetero	INTERGENIC
SBS	Chr10	19656734	C-A	Hetero	UTR_3_PRIME
SBS	Chr11	7237432	C-T	Hetero	INTERGENIC
SBS	Chr11	14122040	T-C	Hetero	INTERGENIC
SBS	Chr11	15939031	G-A	Homo	UTR_3_PRIME
SBS	Chr11	19609084	A-G	Hetero	INTERGENIC
SBS	Chr11	21041843	C-A	Hetero	INTERGENIC
SBS	Chr11	21082311	G-T	Hetero	INTERGENIC
SBS	Chr12	8729125	G-A	Hetero	INTERGENIC
SBS	Chr12	23715753	G-A	Hetero	INTERGENIC
SBS	Chr12	26768392	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2224402	2224405	3
Deletion	Chr3	3145972	3145973	1	OsKitaake03g044300
Deletion	Chr9	5819297	5819309	12
Deletion	Chr6	8808165	8808167	2
Deletion	Chr8	10183246	10183249	3
Deletion	Chr7	14163244	14163253	9
Deletion	Chr2	14274227	14274229	2
Deletion	Chr8	18350317	18350320	3
Deletion	Chr12	18744207	18744210	3
Deletion	Chr11	20421729	20421730	1
Deletion	Chr5	21337001	21409000	71999	11
Deletion	Chr11	26110366	26110367	1
Deletion	Chr3	33831599	33831604	5
Deletion	Chr1	38942722	38942730	8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	16624853	Chr7	28876360	2
Translocation	Chr10	16624861	Chr7	28876351	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes