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Mutant Information

Mutant Name	FN2580-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2580-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12695932 G-A Homo INTRON
SBS Chr1 21966438 C-G Homo INTRON
SBS Chr1 25519602 A-G Hetero INTERGENIC
SBS Chr1 35519069 G-A Hetero INTERGENIC
SBS Chr1 35519070 G-A Hetero INTERGENIC
SBS Chr1 40086970 A-G Hetero INTERGENIC
SBS Chr2 2393015 C-T Hetero INTERGENIC
SBS Chr2 17544360 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g176100
SBS Chr2 21721391 T-C Homo INTERGENIC
SBS Chr2 28046538 T-A Hetero INTERGENIC
SBS Chr2 30889690 G-A Hetero INTERGENIC
SBS Chr2 34519411 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g358800
SBS Chr3 17378581 T-C Hetero INTERGENIC
SBS Chr3 20354828 T-A Homo INTERGENIC
SBS Chr3 20552270 G-T Hetero INTERGENIC
SBS Chr3 25300231 C-T Hetero INTERGENIC
SBS Chr4 1747863 T-C Hetero INTERGENIC
SBS Chr4 7532983 G-A Hetero INTERGENIC
SBS Chr4 11323583 G-A Hetero INTERGENIC
SBS Chr5 2512525 C-T Hetero INTERGENIC
SBS Chr5 11444623 C-T Hetero INTERGENIC
SBS Chr6 4873565 C-A Hetero INTERGENIC
SBS Chr6 9828110 C-G Homo INTERGENIC
SBS Chr6 27701176 G-A Hetero INTERGENIC
SBS Chr9 8301844 T-A Homo INTRON
SBS Chr9 14043278 T-A Hetero INTERGENIC
SBS Chr9 14353824 C-A Hetero INTERGENIC
SBS Chr10 484542 A-T Homo INTERGENIC
SBS Chr10 484544 A-G Homo INTERGENIC
SBS Chr10 6313602 A-T Homo INTERGENIC
SBS Chr10 11349130 A-C Homo INTERGENIC
SBS Chr10 13173827 T-C Homo INTERGENIC
SBS Chr10 15628443 G-T Hetero INTERGENIC
SBS Chr10 17890792 T-C Hetero INTERGENIC
SBS Chr10 22642592 G-C Homo INTERGENIC
SBS Chr11 2180106 C-T Homo SYNONYMOUS_CODING
SBS Chr11 24142709 A-C Hetero INTERGENIC
SBS Chr12 8971690 C-G Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2899435 2899436 1
Deletion Chr8 3116974 3116979 5
Deletion Chr3 4019809 4019811 2
Deletion Chr2 4778158 4778159 1
Deletion Chr11 4788001 4801000 12999 OsKitaake11g061700
Deletion Chr4 6165945 6165948 3
Deletion Chr12 9940955 9940962 7
Deletion Chr10 11660427 11660428 1
Deletion Chr3 18310850 18310854 4
Deletion Chr6 18459271 18459272 1
Deletion Chr6 23376662 23376667 5
Deletion Chr4 24364556 24364561 5
Deletion Chr2 24508385 24508387 2
Deletion Chr8 25564398 25564400 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 24769631 24769634 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 7204437 7649663 OsKitaake04g038400
Inversion Chr10 14534696 14780028
Inversion Chr10 14568953 14780027
Inversion Chr8 19090282 19097077
Inversion Chr8 19090286 19097077

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 14534708 Chr4 7649668 OsKitaake04g038400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12695932	G-A	Homo	INTRON
SBS	Chr1	21966438	C-G	Homo	INTRON
SBS	Chr1	25519602	A-G	Hetero	INTERGENIC
SBS	Chr1	35519069	G-A	Hetero	INTERGENIC
SBS	Chr1	35519070	G-A	Hetero	INTERGENIC
SBS	Chr1	40086970	A-G	Hetero	INTERGENIC
SBS	Chr2	2393015	C-T	Hetero	INTERGENIC
SBS	Chr2	17544360	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g176100
SBS	Chr2	21721391	T-C	Homo	INTERGENIC
SBS	Chr2	28046538	T-A	Hetero	INTERGENIC
SBS	Chr2	30889690	G-A	Hetero	INTERGENIC
SBS	Chr2	34519411	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g358800
SBS	Chr3	17378581	T-C	Hetero	INTERGENIC
SBS	Chr3	20354828	T-A	Homo	INTERGENIC
SBS	Chr3	20552270	G-T	Hetero	INTERGENIC
SBS	Chr3	25300231	C-T	Hetero	INTERGENIC
SBS	Chr4	1747863	T-C	Hetero	INTERGENIC
SBS	Chr4	7532983	G-A	Hetero	INTERGENIC
SBS	Chr4	11323583	G-A	Hetero	INTERGENIC
SBS	Chr5	2512525	C-T	Hetero	INTERGENIC
SBS	Chr5	11444623	C-T	Hetero	INTERGENIC
SBS	Chr6	4873565	C-A	Hetero	INTERGENIC
SBS	Chr6	9828110	C-G	Homo	INTERGENIC
SBS	Chr6	27701176	G-A	Hetero	INTERGENIC
SBS	Chr9	8301844	T-A	Homo	INTRON
SBS	Chr9	14043278	T-A	Hetero	INTERGENIC
SBS	Chr9	14353824	C-A	Hetero	INTERGENIC
SBS	Chr10	484542	A-T	Homo	INTERGENIC
SBS	Chr10	484544	A-G	Homo	INTERGENIC
SBS	Chr10	6313602	A-T	Homo	INTERGENIC
SBS	Chr10	11349130	A-C	Homo	INTERGENIC
SBS	Chr10	13173827	T-C	Homo	INTERGENIC
SBS	Chr10	15628443	G-T	Hetero	INTERGENIC
SBS	Chr10	17890792	T-C	Hetero	INTERGENIC
SBS	Chr10	22642592	G-C	Homo	INTERGENIC
SBS	Chr11	2180106	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	24142709	A-C	Hetero	INTERGENIC
SBS	Chr12	8971690	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2899435	2899436	1
Deletion	Chr8	3116974	3116979	5
Deletion	Chr3	4019809	4019811	2
Deletion	Chr2	4778158	4778159	1
Deletion	Chr11	4788001	4801000	12999	OsKitaake11g061700
Deletion	Chr4	6165945	6165948	3
Deletion	Chr12	9940955	9940962	7
Deletion	Chr10	11660427	11660428	1
Deletion	Chr3	18310850	18310854	4
Deletion	Chr6	18459271	18459272	1
Deletion	Chr6	23376662	23376667	5
Deletion	Chr4	24364556	24364561	5
Deletion	Chr2	24508385	24508387	2
Deletion	Chr8	25564398	25564400	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7204437	7649663	OsKitaake04g038400
Inversion	Chr10	14534696	14780028
Inversion	Chr10	14568953	14780027
Inversion	Chr8	19090282	19097077
Inversion	Chr8	19090286	19097077

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes