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Mutant Information

Mutant Name	FN2581-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2581-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6824938 T-C Homo INTERGENIC
SBS Chr1 10222365 T-C Hetero INTERGENIC
SBS Chr1 15050172 C-T Hetero INTERGENIC
SBS Chr1 20160006 A-C Hetero INTERGENIC
SBS Chr1 20160015 G-T Hetero INTERGENIC
SBS Chr1 20160017 C-T Hetero INTERGENIC
SBS Chr1 28844333 C-T Homo INTRON
SBS Chr1 37997843 C-A Hetero INTERGENIC
SBS Chr1 41663825 A-T Hetero INTERGENIC
SBS Chr2 714277 G-A Hetero INTRON
SBS Chr2 2607892 G-T Hetero INTERGENIC
SBS Chr2 15332430 A-T Hetero INTERGENIC
SBS Chr2 15636518 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g161800
SBS Chr2 16947812 G-T Hetero INTERGENIC
SBS Chr3 35220047 A-C Hetero INTRON
SBS Chr4 2451218 C-G Hetero INTERGENIC
SBS Chr4 5152722 G-A Hetero INTERGENIC
SBS Chr4 6759196 G-T Hetero INTERGENIC
SBS Chr4 9878819 C-T Hetero INTERGENIC
SBS Chr4 10830948 G-A Hetero INTERGENIC
SBS Chr4 14533311 A-C Homo INTERGENIC
SBS Chr4 17977503 G-C Homo INTRON
SBS Chr4 33401736 C-T Homo INTERGENIC
SBS Chr5 26106516 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g230500
SBS Chr6 7330803 T-C Homo NON_SYNONYMOUS_CODING OsKitaake06g094600
SBS Chr6 15230141 G-C Homo INTERGENIC
SBS Chr6 17418244 G-A Hetero INTERGENIC
SBS Chr7 16163889 A-T Hetero INTERGENIC
SBS Chr7 25409433 C-G Hetero INTERGENIC
SBS Chr7 29440039 C-G Hetero INTERGENIC
SBS Chr9 8225806 A-T Hetero INTERGENIC
SBS Chr11 4143530 G-T Hetero INTRON
SBS Chr11 4919160 C-T Hetero INTERGENIC
SBS Chr12 5343554 G-C Hetero INTERGENIC
SBS Chr12 8329475 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 11134910 A-C Hetero INTERGENIC
SBS Chr12 20469045 C-T Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 793001 944000 150999 25
Deletion Chr7 947001 1018000 70999 8
Deletion Chr8 1676661 1676664 3
Deletion Chr4 3875913 3875915 2
Deletion Chr7 4823088 4823090 2 OsKitaake07g059200
Deletion Chr10 4917770 4917772 2
Deletion Chr5 10120001 10143000 22999 OsKitaake05g089901
Deletion Chr5 10147001 10464000 316999
Deletion Chr8 18191001 18238000 46999 4
Deletion Chr3 22496447 22496460 13
Deletion Chr8 26835444 26835450 6 OsKitaake08g217400
Deletion Chr11 29270566 29270568 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23591868 23591871 2
Insertion Chr1 32299490 32299493 2
Insertion Chr7 19536450 19536453 2
Insertion Chr8 13431372 13431374 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 3334962 3340103 2
Inversion Chr8 3334970 3340118 2
Inversion Chr12 9973294 10061133 OsKitaake12g095200

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 4830516 Chr5 21100370 OsKitaake05g169800
Translocation Chr12 4834736 Chr5 21100361 OsKitaake05g169800
Translocation Chr12 21252933 Chr3 16207932

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6824938	T-C	Homo	INTERGENIC
SBS	Chr1	10222365	T-C	Hetero	INTERGENIC
SBS	Chr1	15050172	C-T	Hetero	INTERGENIC
SBS	Chr1	20160006	A-C	Hetero	INTERGENIC
SBS	Chr1	20160015	G-T	Hetero	INTERGENIC
SBS	Chr1	20160017	C-T	Hetero	INTERGENIC
SBS	Chr1	28844333	C-T	Homo	INTRON
SBS	Chr1	37997843	C-A	Hetero	INTERGENIC
SBS	Chr1	41663825	A-T	Hetero	INTERGENIC
SBS	Chr2	714277	G-A	Hetero	INTRON
SBS	Chr2	2607892	G-T	Hetero	INTERGENIC
SBS	Chr2	15332430	A-T	Hetero	INTERGENIC
SBS	Chr2	15636518	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g161800
SBS	Chr2	16947812	G-T	Hetero	INTERGENIC
SBS	Chr3	35220047	A-C	Hetero	INTRON
SBS	Chr4	2451218	C-G	Hetero	INTERGENIC
SBS	Chr4	5152722	G-A	Hetero	INTERGENIC
SBS	Chr4	6759196	G-T	Hetero	INTERGENIC
SBS	Chr4	9878819	C-T	Hetero	INTERGENIC
SBS	Chr4	10830948	G-A	Hetero	INTERGENIC
SBS	Chr4	14533311	A-C	Homo	INTERGENIC
SBS	Chr4	17977503	G-C	Homo	INTRON
SBS	Chr4	33401736	C-T	Homo	INTERGENIC
SBS	Chr5	26106516	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g230500
SBS	Chr6	7330803	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g094600
SBS	Chr6	15230141	G-C	Homo	INTERGENIC
SBS	Chr6	17418244	G-A	Hetero	INTERGENIC
SBS	Chr7	16163889	A-T	Hetero	INTERGENIC
SBS	Chr7	25409433	C-G	Hetero	INTERGENIC
SBS	Chr7	29440039	C-G	Hetero	INTERGENIC
SBS	Chr9	8225806	A-T	Hetero	INTERGENIC
SBS	Chr11	4143530	G-T	Hetero	INTRON
SBS	Chr11	4919160	C-T	Hetero	INTERGENIC
SBS	Chr12	5343554	G-C	Hetero	INTERGENIC
SBS	Chr12	8329475	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	11134910	A-C	Hetero	INTERGENIC
SBS	Chr12	20469045	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	793001	944000	150999	25
Deletion	Chr7	947001	1018000	70999	8
Deletion	Chr8	1676661	1676664	3
Deletion	Chr4	3875913	3875915	2
Deletion	Chr7	4823088	4823090	2	OsKitaake07g059200
Deletion	Chr10	4917770	4917772	2
Deletion	Chr5	10120001	10143000	22999	OsKitaake05g089901
Deletion	Chr5	10147001	10464000	316999
Deletion	Chr8	18191001	18238000	46999	4
Deletion	Chr3	22496447	22496460	13
Deletion	Chr8	26835444	26835450	6	OsKitaake08g217400
Deletion	Chr11	29270566	29270568	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3334962	3340103	2
Inversion	Chr8	3334970	3340118	2
Inversion	Chr12	9973294	10061133	OsKitaake12g095200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes